Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0767
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    45   1e-05
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    39   5e-04
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    37   0.002
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    37   0.002
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    35   0.008
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    31   0.18 
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    30   0.23 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.41 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.8  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    23   5.0  

>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
           A+MS A+ VA+EMD  L  ++GY+IRFEDCS  PNT
Sbjct: 134 AAMSVAKRVADEMDVDLGEEVGYNIRFEDCS-GPNT 168



 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 264 LRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAV 398
           L  R  LP  +   +F ++ + +Q  V VGETGSG TTQIP + +
Sbjct: 69  LETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVL 113



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/61 (37%), Positives = 27/61 (44%)
 Frame = +1

Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
           + CTQPRRV                  +E+G          G    LKYMTD MLLREAM
Sbjct: 125 IACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRF-EDCSGPNTLLKYMTDGMLLREAM 183

Query: 619 S 621
           +
Sbjct: 184 T 184


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           R  LP  +  +D  + +N +Q  ++V ETGSG TTQ+P +  E
Sbjct: 415 RKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHE 457



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCS 559
           A+MS A  VA+EMD  L +++GYSIRFE+ +
Sbjct: 476 AAMSVAARVAKEMDVRLGQEVGYSIRFENAT 506



 Score = 33.1 bits (72), Expect = 0.033
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 433 KGVGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGT--KHFLKYMTDXMLL 606
           K + CTQPRRV                  QE+G  +S+ R    T  K  +KY+TD MLL
Sbjct: 465 KKICCTQPRRVAAMSVAARVAKEMDVRLGQEVG--YSI-RFENATSEKTVIKYLTDGMLL 521

Query: 607 REAMS 621
           RE ++
Sbjct: 522 REFLT 526


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           + L +R  LP  E  +   + +  ++  V+VGETGSG +TQIP +  E
Sbjct: 88  DILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNE 135



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
           A+++ A+ VA E    L  ++GYSIRF+D
Sbjct: 153 AAVNLAKRVAAEQGCRLGEQVGYSIRFDD 181



 Score = 25.4 bits (53), Expect = 6.7
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGT--KHFLKYMTDXMLLRE 612
           V  TQPRRV                  +++G  +S+ R    T  K  +KY+TD MLLRE
Sbjct: 144 VAITQPRRVAAVNLAKRVAAEQGCRLGEQVG--YSI-RFDDTTSKKTRIKYLTDGMLLRE 200

Query: 613 AMS 621
            ++
Sbjct: 201 LIN 203


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 270 KRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           +R  LP  +    F   ++ +Q  VL+GETGSG TTQI  +  E
Sbjct: 506 QREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAE 549



 Score = 32.7 bits (71), Expect = 0.044
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
           A+MS A+ VAEE+   +  ++GY+IRFED
Sbjct: 568 AAMSVAKRVAEEVGCRVGEEVGYTIRFED 596



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 433 KGVGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHF--LKYMTDXMLL 606
           K +GCTQPRRV                  +E+G  +++ R    T     +KYMTD ML 
Sbjct: 557 KMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVG--YTI-RFEDKTSRMTQIKYMTDGMLQ 613

Query: 607 REAM 618
           RE +
Sbjct: 614 RECL 617


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
           A+MS A+ V+EEM   L   +GYSIRFED +  P+T
Sbjct: 549 AAMSVAKRVSEEMGVRLGSTVGYSIRFEDVT-GPDT 583



 Score = 32.3 bits (70), Expect = 0.058
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 KRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           +R  LP          ++  +Q  ++VGETGSG TTQ+  +  E
Sbjct: 488 QREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYE 531



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
           +GCTQPRRV                    +G       +  G    +KYMTD +LLRE++
Sbjct: 540 IGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDV-TGPDTVIKYMTDGVLLRESL 598


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 264 LRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383
           +R+R  LP  E        +   Q  V+ GETGSG +TQ+
Sbjct: 571 VREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQV 610


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           E    RL LP           +  +   ++ G TGSG TTQ+P +  E
Sbjct: 390 EIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFE 437


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           R  LP           +N  Q  ++ G+TG G +TQIP + +E
Sbjct: 628 RNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFLLE 670


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 321 LNTHQCXVLVGETGSGXTTQI 383
           + T++  +LVGETG+G TT I
Sbjct: 464 VQTNEPLLLVGETGTGKTTTI 484


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 22.6 bits (46), Expect(2) = 5.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 439 VGCTQPRRV 465
           +GCTQPRR+
Sbjct: 74  IGCTQPRRL 82



 Score = 21.4 bits (43), Expect(2) = 5.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 577 LKYMTDXMLLRE 612
           +KYMTD +LL E
Sbjct: 119 IKYMTDGILLNE 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,621
Number of Sequences: 5004
Number of extensions: 35204
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)