BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0767 (621 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001 SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004 SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 38 0.007 SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007 SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009 SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061 SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.081 SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 32 0.33 SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57 SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) 28 5.3 SB_59790| Best HMM Match : VWA (HMM E-Value=0) 28 7.0 SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5) 28 7.0 SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015) 28 7.0 >SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 36 Score = 40.7 bits (91), Expect = 0.001 Identities = 19/34 (55%), Positives = 26/34 (76%) Frame = +2 Query: 473 MSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574 MS AQ VA+E+D L +++GY+IRFEDC+ P T Sbjct: 1 MSVAQRVADELDVTLGQEVGYTIRFEDCT-GPRT 33 >SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 696 Score = 38.7 bits (86), Expect = 0.004 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +3 Query: 267 RKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401 R++L LP + Q ++VGETGSG TTQIP + E Sbjct: 53 RQKLSLPIFSARKSLITEIRNRQNVIIVGETGSGKTTQIPQYLYE 97 Score = 35.1 bits (77), Expect = 0.046 Identities = 23/65 (35%), Positives = 30/65 (46%) Frame = +1 Query: 424 ARLKGVGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXML 603 AR + CTQPRRV +E+G + TK +KYMTD ML Sbjct: 101 ARNSVIACTQPRRVAAISIAQRVSREMGVQLGEEVGYTVRFEDV-TSTKTRIKYMTDGML 159 Query: 604 LREAM 618 LRE++ Sbjct: 160 LRESI 164 Score = 31.5 bits (68), Expect = 0.57 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +2 Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553 A++S AQ V+ EM L ++GY++RFED Sbjct: 115 AAISIAQRVSREMGVQLGEEVGYTVRFED 143 >SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) Length = 1197 Score = 37.9 bits (84), Expect = 0.007 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +3 Query: 234 SSAFTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401 SS F + +++R LP + ++ +Q ++VGETGSG TTQ+ + E Sbjct: 593 SSDFASKKSLVQQRQYLPIFAVRQELLSIVRDNQVVIIVGETGSGKTTQLTQYMHE 648 Score = 37.9 bits (84), Expect = 0.007 Identities = 17/29 (58%), Positives = 24/29 (82%) Frame = +2 Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553 A+MS A+ V+EEMD +L ++GY+IRFED Sbjct: 666 AAMSVAKRVSEEMDCSLGEEVGYAIRFED 694 >SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 871 Score = 37.9 bits (84), Expect = 0.007 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401 R LP + ++ HQ ++ GETGSG TTQIP + E Sbjct: 126 RRSLPVYGYREELLEAISEHQVLIIEGETGSGKTTQIPQYLYE 168 >SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1303 Score = 37.5 bits (83), Expect = 0.009 Identities = 18/36 (50%), Positives = 27/36 (75%) Frame = +2 Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574 A+MS A+ V+EE L +++GY+IRFEDC+ +P T Sbjct: 335 AAMSVAKRVSEEFGCRLGQEVGYTIRFEDCT-SPET 369 Score = 37.1 bits (82), Expect = 0.011 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = +3 Query: 264 LRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401 +++R LP + ++ + ++ +Q +++GETGSG TTQI + E Sbjct: 272 IQQREGLPIFKLRDELVKAVHQNQVLIVIGETGSGKTTQITQYLAE 317 Score = 27.9 bits (59), Expect = 7.0 Identities = 19/60 (31%), Positives = 24/60 (40%) Frame = +1 Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618 + CTQPRRV QE+G + +KYMTD LLRE + Sbjct: 326 LACTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRF-EDCTSPETKIKYMTDGFLLRECL 384 >SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1168 Score = 34.7 bits (76), Expect = 0.061 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +3 Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401 RL LP ++ + +L GETGSG TTQ+P + E Sbjct: 291 RLQLPILAEEQAIMEAISENNVVILCGETGSGKTTQVPQFLYE 333 >SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 311 Score = 34.3 bits (75), Expect = 0.081 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +3 Query: 243 FTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXW 392 F L + R + LP + + HQ ++ G+TG G +TQ+P + Sbjct: 157 FNKLAKLKRDQTNLPISQFRQQIVDAVKNHQVVIIAGDTGCGKSTQVPQY 206 >SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) Length = 2352 Score = 32.3 bits (70), Expect = 0.33 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383 E R LP + + + +Q VL+GETGSG +TQI Sbjct: 715 EKRRLESALPIYARKSQIIQTIKDNQVTVLIGETGSGKSTQI 756 >SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1704 Score = 31.5 bits (68), Expect = 0.57 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 282 LPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401 LP ++ + + V+ G TGSG TTQ+P + ++ Sbjct: 74 LPITSYHHEIVNTIENNSACVIFGPTGSGKTTQVPQYILD 113 >SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) Length = 185 Score = 28.3 bits (60), Expect = 5.3 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 491 VAEEMDXALVRKLGYSIRFEDC 556 VAEE D +++GY +RF DC Sbjct: 6 VAEERDTFAGQEVGYCVRFNDC 27 >SB_59790| Best HMM Match : VWA (HMM E-Value=0) Length = 4151 Score = 27.9 bits (59), Expect = 7.0 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +2 Query: 398 RVCXSKXPRQGLRAWAVLNQDE-WASMS 478 R C K R+GLR +AV N++E WAS S Sbjct: 4024 RQCFFKALRKGLRYFAVQNRNECWASPS 4051 >SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 583 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +3 Query: 114 KGREGCGCCEIRNHRXTFRSNYQYDYHH 197 +GR CG C+ RN + + + Y D H+ Sbjct: 79 RGRTACGFCDERNAKTSHPAKYLTDVHN 106 >SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5) Length = 256 Score = 27.9 bits (59), Expect = 7.0 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +2 Query: 425 QGLRAWAVLNQDEWAS-MSGAQXVAEEMDXALVRKLGYSIRFE 550 QG V+ Q S +S A+ VA E AL +GYS+RF+ Sbjct: 14 QGAECNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 56 >SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015) Length = 592 Score = 27.9 bits (59), Expect = 7.0 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +2 Query: 425 QGLRAWAVLNQDEWAS-MSGAQXVAEEMDXALVRKLGYSIRFE 550 QG V+ Q S +S A+ VA E AL +GYS+RF+ Sbjct: 353 QGAECNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 395 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,828,672 Number of Sequences: 59808 Number of extensions: 265281 Number of successful extensions: 476 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 399 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 468 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1536271375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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