Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0767
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 38 0.007
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.081
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 32 0.33
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) 28 5.3
SB_59790| Best HMM Match : VWA (HMM E-Value=0) 28 7.0
SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5) 28 7.0
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015) 28 7.0
>SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 473 MSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
MS AQ VA+E+D L +++GY+IRFEDC+ P T
Sbjct: 1 MSVAQRVADELDVTLGQEVGYTIRFEDCT-GPRT 33
>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 267 RKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
R++L LP + Q ++VGETGSG TTQIP + E
Sbjct: 53 RQKLSLPIFSARKSLITEIRNRQNVIIVGETGSGKTTQIPQYLYE 97
Score = 35.1 bits (77), Expect = 0.046
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +1
Query: 424 ARLKGVGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXML 603
AR + CTQPRRV +E+G + TK +KYMTD ML
Sbjct: 101 ARNSVIACTQPRRVAAISIAQRVSREMGVQLGEEVGYTVRFEDV-TSTKTRIKYMTDGML 159
Query: 604 LREAM 618
LRE++
Sbjct: 160 LRESI 164
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
A++S AQ V+ EM L ++GY++RFED
Sbjct: 115 AAISIAQRVSREMGVQLGEEVGYTVRFED 143
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 234 SSAFTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
SS F + +++R LP + ++ +Q ++VGETGSG TTQ+ + E
Sbjct: 593 SSDFASKKSLVQQRQYLPIFAVRQELLSIVRDNQVVIIVGETGSGKTTQLTQYMHE 648
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
A+MS A+ V+EEMD +L ++GY+IRFED
Sbjct: 666 AAMSVAKRVSEEMDCSLGEEVGYAIRFED 694
>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
R LP + ++ HQ ++ GETGSG TTQIP + E
Sbjct: 126 RRSLPVYGYREELLEAISEHQVLIIEGETGSGKTTQIPQYLYE 168
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
A+MS A+ V+EE L +++GY+IRFEDC+ +P T
Sbjct: 335 AAMSVAKRVSEEFGCRLGQEVGYTIRFEDCT-SPET 369
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 264 LRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
+++R LP + ++ + ++ +Q +++GETGSG TTQI + E
Sbjct: 272 IQQREGLPIFKLRDELVKAVHQNQVLIVIGETGSGKTTQITQYLAE 317
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
+ CTQPRRV QE+G + +KYMTD LLRE +
Sbjct: 326 LACTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRF-EDCTSPETKIKYMTDGFLLRECL 384
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 34.7 bits (76), Expect = 0.061
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
RL LP ++ + +L GETGSG TTQ+P + E
Sbjct: 291 RLQLPILAEEQAIMEAISENNVVILCGETGSGKTTQVPQFLYE 333
>SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 34.3 bits (75), Expect = 0.081
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 243 FTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXW 392
F L + R + LP + + HQ ++ G+TG G +TQ+P +
Sbjct: 157 FNKLAKLKRDQTNLPISQFRQQIVDAVKNHQVVIIAGDTGCGKSTQVPQY 206
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383
E R LP + + + +Q VL+GETGSG +TQI
Sbjct: 715 EKRRLESALPIYARKSQIIQTIKDNQVTVLIGETGSGKSTQI 756
>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 31.5 bits (68), Expect = 0.57
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 282 LPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
LP ++ + + V+ G TGSG TTQ+P + ++
Sbjct: 74 LPITSYHHEIVNTIENNSACVIFGPTGSGKTTQVPQYILD 113
>SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09)
Length = 185
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 491 VAEEMDXALVRKLGYSIRFEDC 556
VAEE D +++GY +RF DC
Sbjct: 6 VAEERDTFAGQEVGYCVRFNDC 27
>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
Length = 4151
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 398 RVCXSKXPRQGLRAWAVLNQDE-WASMS 478
R C K R+GLR +AV N++E WAS S
Sbjct: 4024 RQCFFKALRKGLRYFAVQNRNECWASPS 4051
>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 114 KGREGCGCCEIRNHRXTFRSNYQYDYHH 197
+GR CG C+ RN + + + Y D H+
Sbjct: 79 RGRTACGFCDERNAKTSHPAKYLTDVHN 106
>SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 256
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 425 QGLRAWAVLNQDEWAS-MSGAQXVAEEMDXALVRKLGYSIRFE 550
QG V+ Q S +S A+ VA E AL +GYS+RF+
Sbjct: 14 QGAECNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 56
>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
Length = 592
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 425 QGLRAWAVLNQDEWAS-MSGAQXVAEEMDXALVRKLGYSIRFE 550
QG V+ Q S +S A+ VA E AL +GYS+RF+
Sbjct: 353 QGAECNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 395
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,828,672
Number of Sequences: 59808
Number of extensions: 265281
Number of successful extensions: 476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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