SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0767
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            38   0.007
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.009
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.061
SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.081
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      32   0.33 
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09)            28   5.3  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   7.0  
SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)                     28   7.0  
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)                     28   7.0  

>SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +2

Query: 473 MSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
           MS AQ VA+E+D  L +++GY+IRFEDC+  P T
Sbjct: 1   MSVAQRVADELDVTLGQEVGYTIRFEDCT-GPRT 33


>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 267 RKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           R++L LP           +   Q  ++VGETGSG TTQIP +  E
Sbjct: 53  RQKLSLPIFSARKSLITEIRNRQNVIIVGETGSGKTTQIPQYLYE 97



 Score = 35.1 bits (77), Expect = 0.046
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = +1

Query: 424 ARLKGVGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXML 603
           AR   + CTQPRRV                  +E+G       +   TK  +KYMTD ML
Sbjct: 101 ARNSVIACTQPRRVAAISIAQRVSREMGVQLGEEVGYTVRFEDV-TSTKTRIKYMTDGML 159

Query: 604 LREAM 618
           LRE++
Sbjct: 160 LRESI 164



 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
           A++S AQ V+ EM   L  ++GY++RFED
Sbjct: 115 AAISIAQRVSREMGVQLGEEVGYTVRFED 143


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 234 SSAFTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           SS F +    +++R  LP      +   ++  +Q  ++VGETGSG TTQ+  +  E
Sbjct: 593 SSDFASKKSLVQQRQYLPIFAVRQELLSIVRDNQVVIIVGETGSGKTTQLTQYMHE 648



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
           A+MS A+ V+EEMD +L  ++GY+IRFED
Sbjct: 666 AAMSVAKRVSEEMDCSLGEEVGYAIRFED 694


>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           R  LP      +    ++ HQ  ++ GETGSG TTQIP +  E
Sbjct: 126 RRSLPVYGYREELLEAISEHQVLIIEGETGSGKTTQIPQYLYE 168


>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = +2

Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
           A+MS A+ V+EE    L +++GY+IRFEDC+ +P T
Sbjct: 335 AAMSVAKRVSEEFGCRLGQEVGYTIRFEDCT-SPET 369



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +3

Query: 264 LRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           +++R  LP  +  ++  + ++ +Q  +++GETGSG TTQI  +  E
Sbjct: 272 IQQREGLPIFKLRDELVKAVHQNQVLIVIGETGSGKTTQITQYLAE 317



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +1

Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
           + CTQPRRV                  QE+G            +  +KYMTD  LLRE +
Sbjct: 326 LACTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRF-EDCTSPETKIKYMTDGFLLRECL 384


>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1168

 Score = 34.7 bits (76), Expect = 0.061
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           RL LP           ++ +   +L GETGSG TTQ+P +  E
Sbjct: 291 RLQLPILAEEQAIMEAISENNVVILCGETGSGKTTQVPQFLYE 333


>SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 243 FTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXW 392
           F  L +  R +  LP  +        +  HQ  ++ G+TG G +TQ+P +
Sbjct: 157 FNKLAKLKRDQTNLPISQFRQQIVDAVKNHQVVIIAGDTGCGKSTQVPQY 206


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383
           E  R    LP     +   + +  +Q  VL+GETGSG +TQI
Sbjct: 715 EKRRLESALPIYARKSQIIQTIKDNQVTVLIGETGSGKSTQI 756


>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 282 LPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
           LP     ++    +  +   V+ G TGSG TTQ+P + ++
Sbjct: 74  LPITSYHHEIVNTIENNSACVIFGPTGSGKTTQVPQYILD 113


>SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09)
          Length = 185

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 491 VAEEMDXALVRKLGYSIRFEDC 556
           VAEE D    +++GY +RF DC
Sbjct: 6   VAEERDTFAGQEVGYCVRFNDC 27


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 398  RVCXSKXPRQGLRAWAVLNQDE-WASMS 478
            R C  K  R+GLR +AV N++E WAS S
Sbjct: 4024 RQCFFKALRKGLRYFAVQNRNECWASPS 4051


>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 114 KGREGCGCCEIRNHRXTFRSNYQYDYHH 197
           +GR  CG C+ RN + +  + Y  D H+
Sbjct: 79  RGRTACGFCDERNAKTSHPAKYLTDVHN 106


>SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)
          Length = 256

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 425 QGLRAWAVLNQDEWAS-MSGAQXVAEEMDXALVRKLGYSIRFE 550
           QG     V+ Q    S +S A+ VA E   AL   +GYS+RF+
Sbjct: 14  QGAECNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 56


>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
          Length = 592

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 425 QGLRAWAVLNQDEWAS-MSGAQXVAEEMDXALVRKLGYSIRFE 550
           QG     V+ Q    S +S A+ VA E   AL   +GYS+RF+
Sbjct: 353 QGAECNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,828,672
Number of Sequences: 59808
Number of extensions: 265281
Number of successful extensions: 476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -