Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0767
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    26   0.34 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.79 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.0  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 105 QKEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQY---TXTKXIYWSSAFTTLHE 260
           ++E+ RE      + N      +NY+Y+Y++ Y Y      K +Y+ +    + +
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 105 QKEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQYTXTKXIYWS 236
           ++E+ RE      + N      +NY+Y+Y++       K +Y++
Sbjct: 72  ERERSREPKIISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 105 QKEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQYTXTKXIYWS 236
           ++E+ RE      + N      +NY+Y+Y++       K +Y++
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 105 QKEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQYTXTKXIYWS 236
           ++E+ RE      + N      +NY+Y+Y++       K +Y++
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 105 QKEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQYTXTKXIYWS 236
           ++E+ RE      + N      +NY+Y+Y++       K +Y++
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,619
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)