Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0767
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 51 7e-07
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 50 2e-06
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 43 1e-04
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 42 2e-04
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 41 8e-04
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 40 0.002
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 40 0.002
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 39 0.002
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 38 0.004
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 38 0.004
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 37 0.012
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 35 0.038
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 34 0.087
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 33 0.12
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 33 0.12
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 33 0.15
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 33 0.15
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 33 0.20
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 32 0.27
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 30 1.1
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 28 4.3
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 28 4.3
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 28 4.3
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +3
Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
E L KR LP +DF LN++Q +LVGETGSG TTQIP + ++
Sbjct: 57 EILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLD 104
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCS 559
A+MS ++ VA+EMD ++ ++GYSIRFEDC+
Sbjct: 128 AAMSVSRRVADEMDVSIGEEVGYSIRFEDCT 158
Score = 40.3 bits (90), Expect = 0.001
Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Frame = +1
Query: 217 LNXYTGLPHSQRYMSXYENVXDSXSXNXKMISXDYSTLTNVXCSXEKQGQGRLPRFPXGL 396
+N + G +SQRY E D K + + G G+ + P +
Sbjct: 43 INKWNGKAYSQRYFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFV 102
Query: 397 *SLXQ*VA*ARLKG----VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXG 564
L VA KG VGCTQPRRV +E+G
Sbjct: 103 --LDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRF-EDCTS 159
Query: 565 TKHFLKYMTDXMLLREAMS 621
++ LKY+TD MLLREAM+
Sbjct: 160 SRTMLKYLTDGMLLREAMA 178
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3
Query: 255 HEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
++ L KR LP +F + LN +Q +LVGETGSG TTQIP + ++
Sbjct: 52 YDILEKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVID 100
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
A+MS ++ VAEEMD + ++GYSIRFEDCS +P T
Sbjct: 124 AAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS-SPRT 158
Score = 37.1 bits (82), Expect = 0.009
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 2/137 (1%)
Frame = +1
Query: 217 LNXYTGLPHSQRYMSXYENVXDSXSXNXKMISXDYSTLTNVXCSXEKQGQGRLPRFPXG- 393
+N + G P+SQRY E K + G G+ + P
Sbjct: 39 INKWNGKPYSQRYYDILEKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFV 98
Query: 394 L*SLXQ*VA*ARLKG-VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTK 570
+ ++ + R K VGCTQPRRV +E+G +
Sbjct: 99 IDAVDAETSDKRRKWLVGCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-EDCSSPR 157
Query: 571 HFLKYMTDXMLLREAMS 621
LKY+TD MLLREAM+
Sbjct: 158 TVLKYLTDGMLLREAMA 174
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +3
Query: 234 SSAFTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVEFAXV 413
S+ + H R LP + + HQ ++VGETGSG TTQIP + E A
Sbjct: 454 SAGKSAFHMLQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHE-AGY 512
Query: 414 SXLGK 428
+ LGK
Sbjct: 513 TKLGK 517
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCS 559
A+MS A VA+EM L ++GYSIRFEDC+
Sbjct: 527 AAMSVAARVAQEMGGKLGHEVGYSIRFEDCT 557
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/64 (37%), Positives = 27/64 (42%)
Frame = +1
Query: 427 RLKGVGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLL 606
+L VGCTQPRRV E+G K LKYMTD MLL
Sbjct: 514 KLGKVGCTQPRRVAAMSVAARVAQEMGGKLGHEVGYSIRF-EDCTSEKTILKYMTDGMLL 572
Query: 607 REAM 618
RE +
Sbjct: 573 RELL 576
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 246 TTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
T L E R LP + + + HQ V+VG+TGSG TTQIP + E
Sbjct: 392 TALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHE 443
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCS 559
A+MS A VA+EM L ++GYSIRFEDC+
Sbjct: 461 AAMSVAARVAQEMGVKLGHEVGYSIRFEDCT 491
Score = 34.7 bits (76), Expect = 0.050
Identities = 23/60 (38%), Positives = 25/60 (41%)
Frame = +1
Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
VGCTQPRRV E+G K LKYMTD MLLRE +
Sbjct: 452 VGCTQPRRVAAMSVAARVAQEMGVKLGHEVGYSIRF-EDCTSDKTVLKYMTDGMLLRELL 510
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 267 RKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
++R LP + + L+ H ++VGETGSG TTQIP + E
Sbjct: 43 KQRQRLPVYKYRTEILYLVENHATTIIVGETGSGKTTQIPQYLKE 87
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 425 QGLRAWAVLNQDEWASMSGAQXVAEEMDXALVRKLGYSIRFED 553
+G R A A + + VAEEM L ++GY+IRFED
Sbjct: 92 EGGRVIACTQPRRLAVQAVSARVAEEMGVNLGEEVGYTIRFED 134
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
A+MS A+ V+EEM+ L K+GY+IRFED + PNT
Sbjct: 586 AAMSVAKRVSEEMETELGDKIGYAIRFEDVT-GPNT 620
Score = 35.5 bits (78), Expect = 0.029
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 237 SAFTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383
S F +R LP ++ +++ +Q V+VGETGSG TTQ+
Sbjct: 518 SEFAMSKTMAEQRQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQL 566
Score = 31.9 bits (69), Expect = 0.35
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +1
Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
VGCTQPRRV +IG + G +KYMTD +LLRE +
Sbjct: 577 VGCTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDV-TGPNTVIKYMTDGVLLRETL 635
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +3
Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
R LP + +L+ +Q V+VGETGSG TTQIP + E
Sbjct: 219 REFLPIHGYREELLKLIEENQVLVIVGETGSGKTTQIPQYLQE 261
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCS 559
A+MS A VA+E+ L ++GYSIRFEDC+
Sbjct: 279 AAMSVASRVAQEVGVKLGHEVGYSIRFEDCT 309
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = +1
Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
+GCTQPRRV E+G K +KYMTD MLLRE +
Sbjct: 270 IGCTQPRRVAAMSVASRVAQEVGVKLGHEVGYSIRF-EDCTSEKTVIKYMTDGMLLRELL 328
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
+ L+ R LP E D + L V+ GETGSG TTQ+P + ++
Sbjct: 589 DMLKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILD 636
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFEDCSXAPNT 574
A+MS A+ VAEE L ++GY+IRFEDC+ P+T
Sbjct: 572 AAMSVAKRVAEEFGCRLGEEVGYAIRFEDCT-GPDT 606
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 KRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
+R LP + + + ++ +Q V++GETGSG TTQ+ + E
Sbjct: 511 QRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAE 554
Score = 33.9 bits (74), Expect = 0.087
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +1
Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLREAM 618
+GCTQPRRV +E+G G +KYMTD MLLRE +
Sbjct: 563 IGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRF-EDCTGPDTVIKYMTDGMLLREIL 621
>At1g58060.1 68414.m06580 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1459
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
+ L+ R LP E N + L V+ GETGSG TTQ+P + ++
Sbjct: 606 DMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILD 653
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 228 YWSSAFTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
YW ++ L R LP + + ++ +Q V+ GETG G TTQIP + +E
Sbjct: 202 YWQASVEG-QRMLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILE 258
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 35.1 bits (77), Expect = 0.038
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
R LP + +F ++ +Q V+ GETG G TTQ+P + +E
Sbjct: 225 REKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILE 267
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
R LP + +N H ++ G+TG G TTQ+P + E
Sbjct: 238 RKDLPIVMMEQEIMEAINRHPAVIISGQTGCGKTTQVPQFLYE 280
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 439 VGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLRE 612
+G TQPRRV +E+G Q + G +K+MTD +LLRE
Sbjct: 295 IGITQPRRVAVLATAKRVAFELGVRLGKEVGFQVRYDKKI-GENSSIKFMTDGILLRE 351
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
A++S A+ VA+E+D L +GY+IRFED
Sbjct: 61 AAVSVARRVAQELDVPLGEDVGYAIRFED 89
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 282 LPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383
LP + + + V++GETGSG +TQ+
Sbjct: 4 LPILQFEEKIVETVEKNSVVVIIGETGSGKSTQL 37
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +1
Query: 433 KGVGCTQPRRVGFYVWCXXXXXXXXXXXXQEIGLQHSV*RLFXGTKHFLKYMTDXMLLRE 612
K +G TQPRR+ Q++G G+ LKYMTD +LLRE
Sbjct: 88 KMIGITQPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTR-LKYMTDGLLLRE 146
Query: 613 AM 618
A+
Sbjct: 147 AL 148
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 467 ASMSGAQXVAEEMDXALVRKLGYSIRFED 553
A+++ A+ VAEE + L +K+GYSIRF+D
Sbjct: 99 AAVTVAKRVAEECEVQLGQKVGYSIRFDD 127
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 237 SAFTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIP 386
S F+ + R LP + + ++VGETGSG TTQ+P
Sbjct: 26 SPFSMRQKIAEHRRSLPIASVEKRLVEEVQKNDILIIVGETGSGKTTQLP 75
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 252 LHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
L E + R LP + + ++Q ++ GETG G TTQ+P + ++
Sbjct: 177 LKEITKLRSKLPITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLD 226
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 273 RLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
R LP + + + + +Q V+ GETG G TTQ+P + +E
Sbjct: 296 RKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILE 338
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 258 EXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQIPXWAVE 401
E R LP + + ++Q ++ GETG G TTQ+P + ++
Sbjct: 209 EIFEARSKLPIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLD 256
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 243 FTTLHEXLRKRLXLPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383
+ L E R LP + ++ Q VL+GETGSG +TQ+
Sbjct: 290 YLILRECRRLEDGLPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQL 336
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 282 LPXXEXXNDFXRLLNTHQCXVLVGETGSGXTTQI 383
LP + ++ Q VL+GETGSG +TQ+
Sbjct: 306 LPIYAYRRQILKKIHREQIMVLIGETGSGKSTQL 339
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 108 KEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQYTXT 218
+E G C + +NH F + D+HH +QY T
Sbjct: 154 QEDGWVVCRVFKKKNHFRGFHQEQEQDHHHHHQYIST 190
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 108 KEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQYTXT 218
+E G C + +NH F + D+HH +QY T
Sbjct: 154 QEDGWVVCRVFKKKNHFRGFHQEQEQDHHHHHQYIST 190
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 108 KEKGREGCGCCEIRNHRXTFRSNYQYDYHHGYQYTXT 218
+E G C + +NH F + D+HH +QY T
Sbjct: 154 QEDGWVVCRVFKKKNHFRGFHQEQEQDHHHHHQYIST 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,815
Number of Sequences: 28952
Number of extensions: 188244
Number of successful extensions: 384
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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