BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0766 (625 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 27 1.7 SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce... 27 2.2 SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 3.8 >SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase Ppk21|Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 444 ISKLFEILNEKLPLKYLLHLKRSGKRXYYYLLFSFLNSD 560 IS+LF + L L Y+L L +G+ Y + FL+ + Sbjct: 115 ISRLFHTFQDDLKLYYVLELAPNGELLQYIKKYRFLDEN 153 >SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces pombe|chr 2|||Manual Length = 214 Score = 27.1 bits (57), Expect = 2.2 Identities = 10/48 (20%), Positives = 23/48 (47%) Frame = +3 Query: 255 PVKRNRIDDSINSITIKNQTGIDNLIDSIXNSKNQPQIILGDEYYQTL 398 P K N++DD + ++++ +D + + N + + + Y TL Sbjct: 142 PAKMNKLDDKVGNLSMVASPDMDTAVFCVVNESVEENFRVSENEYITL 189 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 26.2 bits (55), Expect = 3.8 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 270 RIDDSINSITIKNQTGIDNLIDSIXNSKNQPQIILGDE 383 +ID+ + + Q G++ L+DS+ + N +L DE Sbjct: 982 KIDNFLTKLVDLKQPGLNKLLDSLLSLSNPSTSLLTDE 1019 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,465,266 Number of Sequences: 5004 Number of extensions: 49251 Number of successful extensions: 118 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 118 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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