Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0766
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   1.7  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    27   2.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   3.8  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 444 ISKLFEILNEKLPLKYLLHLKRSGKRXYYYLLFSFLNSD 560
           IS+LF    + L L Y+L L  +G+   Y   + FL+ +
Sbjct: 115 ISRLFHTFQDDLKLYYVLELAPNGELLQYIKKYRFLDEN 153


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +3

Query: 255 PVKRNRIDDSINSITIKNQTGIDNLIDSIXNSKNQPQIILGDEYYQTL 398
           P K N++DD + ++++     +D  +  + N   +    + +  Y TL
Sbjct: 142 PAKMNKLDDKVGNLSMVASPDMDTAVFCVVNESVEENFRVSENEYITL 189


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 270  RIDDSINSITIKNQTGIDNLIDSIXNSKNQPQIILGDE 383
            +ID+ +  +    Q G++ L+DS+ +  N    +L DE
Sbjct: 982  KIDNFLTKLVDLKQPGLNKLLDSLLSLSNPSTSLLTDE 1019


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,266
Number of Sequences: 5004
Number of extensions: 49251
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)