Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0766
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066...    29   2.3  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    28   6.9  
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631           27   9.2  

>03_03_0107 +
           14504065-14504448,14504545-14504922,14506011-14506619,
           14507110-14507237,14507829-14507832
          Length = 500

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 402 LIKVFIGHVKQPKDISKLFEILNEKLPLKYLLHLKRSGKR 521
           L KVF G     KDI +L     E+LP++YL   KR+G++
Sbjct: 389 LPKVFPGETATTKDIIRLQG--KERLPVEYLPQRKRNGEK 426


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 282 CHQFCFFSPGFHILSIVFFLHTDF 211
           C Q C    GFHILS   F+  DF
Sbjct: 91  CFQVCSKQVGFHILSFKNFISKDF 114


>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
          Length = 361

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 276 DDSINSITIKNQTGIDNLIDSIXNS--KNQPQIILGDE 383
           DD +N    +  T +DN IDS   S  KN+  I + +E
Sbjct: 92  DDEVNEYYTEGVTDVDNYIDSAFRSTRKNKAYIFIREE 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,069
Number of Sequences: 37544
Number of extensions: 252858
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)