Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0766
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 290 VYAVINSVSFHRGSIS 243
           VY V  SVS+ RGS++
Sbjct: 388 VYGVNESVSYERGSMT 403


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 568 NPFPGYLERNIPEIQ 612
           +PFPG  E +I E+Q
Sbjct: 359 SPFPGSTEADIIELQ 373


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -3

Query: 341 YTVYQIIYACLIFDRDTVYAVINSVSFHRGSISCLLYSFFTLIF 210
           +T+Y +   C      TV++V+  + +   +I+  +Y+ F+  F
Sbjct: 26  FTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDF 69


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -3

Query: 341 YTVYQIIYACLIFDRDTVYAVINSVSFHRGSISCLLYSFFTLIF 210
           +T+Y +   C      TV++V+  + +   +I+  +Y+ F+  F
Sbjct: 474 FTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDF 517


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 317 ACLIFDRDTVYAVINSV 267
           +CL+ DR+T   +I+S+
Sbjct: 313 SCLVIDRETFNQLISSL 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,009
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)