Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0766
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24010.1 68418.m02821 protein kinase family protein contains ...    29   3.3  
At3g26360.1 68416.m03288 ribosomal protein-related similar to SP...    29   3.3  
At3g25750.1 68416.m03206 F-box family protein contains F-box dom...    28   5.8  
At5g51790.1 68418.m06421 basix helix-loop-helix (bHLH) family pr...    27   7.7  

>At5g24010.1 68418.m02821 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 824

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +3

Query: 249 GTPVKRNRIDDSINSITIKNQTGIDNLIDSIXNSKNQPQIILGDEYYQTLPLIKVFIGHV 428
           G+P  R  + + ++ ITI ++    +L+  +   + Q ++IL  EY    PL     G  
Sbjct: 519 GSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGST 578

Query: 429 KQPKDISKLFEI 464
             P    +  E+
Sbjct: 579 NPPLSWKQRLEV 590


>At3g26360.1 68416.m03288 ribosomal protein-related similar to
           SP|Q9Z3S4 30S ribosomal protein S21 {Rhizobium meliloti}
          Length = 181

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 160 QKSCTERLKSGTRTEGLKISVKKEYNRQDMEPR*KETE 273
           Q S  ERL  GT+T  +K S KK   R+++E R K  +
Sbjct: 48  QSSGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSID 85


>At3g25750.1 68416.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 348

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 387 YQTLPLIKVFIGHVKQPKDISKLFEILNEKLPL 485
           +QTL L+KV +  ++Q  +I     + +EK+PL
Sbjct: 115 HQTLDLLKVGVSEIRQSYEIQIFDGLKDEKIPL 147


>At5g51790.1 68418.m06421 basix helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 209

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 438 KDISKLFEILNEKLPLKYLLHLKRSGKR 521
           ++++ LF  L  +LPLKY+  L   GKR
Sbjct: 40  QEMAILFASLRSQLPLKYIKALSSQGKR 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,302,965
Number of Sequences: 28952
Number of extensions: 234065
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)