Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0761
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.2  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.2  

>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 21/51 (41%), Positives = 22/51 (43%)
 Frame = -3

Query: 719 RQRSRLSGLXPKAPWRSSSPNGAEVTMSLKTIVSRGLLGSIQREKSQRNST 567
           R  S  +GL PK     S      V  SLK IVS G      REK   NST
Sbjct: 366 RTGSLETGLYPKESPTPSKKRSKRVLWSLKHIVSPG-----NREKHSLNST 411


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 577 EIQPVVKSDDNNVSCDKILRSV*SASPDPNAKPPP 473
           E+ P + + D       I+ S+ S+S DP++ PPP
Sbjct: 117 ELFPTLSTTDEQPKEPSII-SISSSSSDPSSSPPP 150


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 251 CKFLKSKFXDWLLWHKALPGNWRIKCL 171
           C+ L SKF +W L H+ +   W ++C+
Sbjct: 369 CETLDSKFSNWNLPHRLV--LWTLRCM 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,421
Number of Sequences: 5004
Number of extensions: 65565
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)