Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0761
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65790.1 68418.m08278 myb family transcription factor (MYB68)...    29   4.1  
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    28   7.2  
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    28   7.2  

>At5g65790.1 68418.m08278 myb family transcription factor (MYB68)
           identical to putative transcription factor (MYB68)
           GI:3941493 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00249 myb-like DNA-binding domain
          Length = 374

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 184 RQFPGSALCQSNQSXNFDLRNLQPQSPWTDLP*MP 288
           RQ  G    QSN S +  L N+   SPW  LP +P
Sbjct: 139 RQQQGQGQGQSNGSTDLYLNNMFGSSPWPLLPQLP 173


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 248 YNRRAHGPTYPRCPPRERSSLLPRQTFFYGKS 343
           Y RR+  P   R PPR RS   PR+   Y +S
Sbjct: 128 YARRSISPRGRRSPPRRRSVTPPRRGRSYSRS 159


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 248 YNRRAHGPTYPRCPPRERSSLLPRQTFFYGKS 343
           Y RR+  P   R PPR RS   PR+   Y +S
Sbjct: 128 YARRSISPRGRRSPPRRRSVTPPRRGRSYSRS 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,029
Number of Sequences: 28952
Number of extensions: 363372
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)