Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0760
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    29   0.59 
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    27   2.4  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   5.5  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    26   5.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   9.6  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 266 TDYLDATEEGPVCYQTD-VLYGSLMKPHGMNEACIYANIHVPLYA 397
           TD  D +++  V   TD +LY   + PH      +Y + H P+YA
Sbjct: 800 TDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPLYYSDHRPIYA 844


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 192 FRGVPYAKQPVGELRFK 242
           F G+ YAK PVG+LR++
Sbjct: 21  FTGIRYAKPPVGKLRWR 37


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 192 NWRIKCLLPPGDYGHTPSLTPSARPHCTTR--AATLLGLNMPLLSPR*RNIVIQRIW 28
           +W +    P  D   +P  TPSA P   T+  A+TL  L +  + P  R   I++++
Sbjct: 292 SWNLLRRRPTNDASTSPRSTPSASPRSITKIIASTLHLLEVFYIHPLIRAQCIEQLF 348


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 582 IQREKSKEIQPVVKSDDNNVSCDKISGPYRSASPDPNAKPPP*IKTNIG 436
           +QRE  +EI+   K   N     K +   + A+P P  K P   K N+G
Sbjct: 111 VQRESPEEIETRKKDRKNRREMLKRTSALQPAAPKPTHKKPV-PKRNVG 158


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 162  RAEASTLYASFRGVPYAKQPVGELRFKELQPQSH 263
            + + + L A   G PY      E+ + EL+PQSH
Sbjct: 1071 KVKLAVLQAQSFGKPYYLTDDDEVLYGELEPQSH 1104


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 516 DKISGPYRSASPDPNAKPP 460
           D I  PYR AS  P   PP
Sbjct: 512 DSIHEPYRPASTQPTENPP 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,973
Number of Sequences: 5004
Number of extensions: 58890
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)