Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0760
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr...    29   2.1  
At5g45620.2 68418.m05607 26S proteasome regulatory subunit, puta...    28   4.8  
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta...    28   4.8  
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr...    28   4.8  
At2g44600.1 68415.m05552 expressed protein                             28   4.8  
At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein / ...    28   6.3  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    28   6.3  
At1g53770.1 68414.m06119 expressed protein                             28   6.3  
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    27   8.3  

>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 442 YWKTRLRRRLTSCRQGVQRHMYIGVDACLIHAVRFHQTSIKNVCLV 305
           +WK   RR L    Q  ++H+Y+  D   +  +R   TS+ N  LV
Sbjct: 113 FWKKNNRRYLADSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLV 158


>At5g45620.2 68418.m05607 26S proteasome regulatory subunit,
           putative (RPN9) contains similarity to 26S proteasome
           subunit p40.5 GI:3618343 from [Homo sapiens]
          Length = 350

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 386 AHVYWRRCMPHSCREVSSDFHKERL 312
           A+ YW     H CR+  SDF+K  L
Sbjct: 158 ANFYWVSSQYHKCRQEFSDFYKSAL 182


>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
           putative (RPN9) contains similarity to 26S proteasome
           subunit p40.5 GI:3618343 from [Homo sapiens]
          Length = 386

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 386 AHVYWRRCMPHSCREVSSDFHKERL 312
           A+ YW     H CR+  SDF+K  L
Sbjct: 158 ANFYWVSSQYHKCRQEFSDFYKSAL 182


>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 442 YWKTRLRRRLTSCRQGVQRHMYIGVDACLIHAVRFHQTSIKNVCLV 305
           +WK   R+ L    Q  ++H+Y+  D   +  +R   TS+ N  LV
Sbjct: 113 FWKKNNRKYLADSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLV 158


>At2g44600.1 68415.m05552 expressed protein
          Length = 313

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 192 NWRIKCLLPPGDYGHTPSLTPSARPHCTTRAA 97
           NW+ K   PP D+G++  L   A+PH +T A+
Sbjct: 266 NWKAK--FPP-DFGYSGELKSPAKPHLSTAAS 294


>At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein /
           anther-specific protein (A6) identical to probable
           glucan endo-1,3-beta-glucosidase A6 precursor SP:Q06915
           from [Arabidopsis thaliana]
          Length = 478

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 350 MNEACIYANIHVPLYALPAAGETPTKPGLPILVFI 454
           +N A    N+   + A P  G TP++PGLPI  F+
Sbjct: 297 LNAATYNRNLIKKMSASPPIG-TPSRPGLPIPTFV 330


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 645 FTKRSRVTMSXRXLFSGDF---RSIQREKSKEIQPVVKSDDNNVSCDKISGPYRSASPDP 475
           F+K   +T+S   +          + R+++K+   V +S D     + +   ++  +P P
Sbjct: 247 FSKHDALTLSTPQVLESRALLSHELLRKRNKDTVVVPESSDRGADSENVEPLFQPTNPSP 306

Query: 474 NAKPPP*IKT 445
            ++P P +KT
Sbjct: 307 KSEPEP-VKT 315


>At1g53770.1 68414.m06119 expressed protein
          Length = 563

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 223 SENFDLRNYNHRAMDRLPRCHRGRSSLLPDRRSLWKSDETSRHE*GMHLRQYTCAFVRP 399
           S  FD        +DR+  C  GR+ ++      WK D+  +    +H+ ++ C F +P
Sbjct: 246 SHRFDYHYSRIIDIDRINTC-LGRTVVV-SFEEFWKKDKNRKKHHHVHINRFICYFSKP 302


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 558 IQPVVKSDDNNVSCDKISGPYRSASPDPNAKPPP 457
           + P V S D  VSC   S      SP  ++ PPP
Sbjct: 20  VTPTVTSKDEVVSCTMCSSCDNPCSPVQSSPPPP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,586
Number of Sequences: 28952
Number of extensions: 334084
Number of successful extensions: 931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)