Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0759
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    27   4.4  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    27   4.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.8  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   5.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   7.6  

>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 695 RFGIKSGGLPYASQSLPNCRQ*P*CRSN 612
           R+G+ SGG+ Y++  L N R  P C SN
Sbjct: 126 RYGV-SGGIQYSNVPLINSRVTPNCESN 152


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 570 HKGFTDDMAVNEEVGIDLVRR 508
           H  +  D  VN+E+  DL+RR
Sbjct: 631 HPSYKQDSVVNDEINYDLIRR 651


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 529  RDRSRKEGQVETLAVGSVEARGSKSVDEHASVDPXSHPARSP 404
            R  S  E  V T+A G  E   + SV++H  V   + P RSP
Sbjct: 1753 RSFSIVESTVPTIASG--EGDDNHSVEDHLKVPTDNEPRRSP 1792


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 581 LKPPRTRSSGNYYGITVTDDNLVVIDWR 664
           L+ PRT    NY   T  + N +V DW+
Sbjct: 65  LRKPRTSPDNNYVEFTEKEINELVDDWK 92


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 96   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 230
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,770
Number of Sequences: 5004
Number of extensions: 61213
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)