Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0759
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37217| Best HMM Match : 7tm_1 (HMM E-Value=0.0005)                  29   4.7  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_37217| Best HMM Match : 7tm_1 (HMM E-Value=0.0005)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 411 AVLMKTSKSLA**RTRKTLTASSIWS-SLVWTKVSPRGSMPILYISMNCLTTSNSCTCRN 235
           A+ +K S      + R   T ++IW  SLV      +  +P+  I M  +  S    C +
Sbjct: 123 AIYLKNSYLFVVTKKRVFATIAAIWLYSLVTLTYDNKNLLPLYCILMATIIVSLGVVCVS 182

Query: 234 FSRCYTPWR 208
           + +C+T  R
Sbjct: 183 YGKCFTAIR 191


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 26/91 (28%), Positives = 44/91 (48%)
 Frame = -1

Query: 474 KHAAVKA*TNMPPLILSLIQHAVLMKTSKSLA**RTRKTLTASSIWSSLVWTKVSPRGSM 295
           K A+V A + +P   L  +  A++  T  S +  RT+   +ASS  +SL  T  S   S 
Sbjct: 207 KTASVSA-SPVPSSYLQTVSKALVTSTENSTSK-RTKSLSSASSSAASLATTAFSTCSSS 264

Query: 294 PILYISMNCLTTSNSCTCRNFSRCYTPWRSP 202
              +I+ + L + NS T +  +    P ++P
Sbjct: 265 GSTFIAAHQLKSGNSGTKKTIN-MLNPGKAP 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,117,317
Number of Sequences: 59808
Number of extensions: 493414
Number of successful extensions: 1280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)