Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0758
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    50   4e-07
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    49   8e-07
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    29   0.50 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.66 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    28   1.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.7  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   4.7  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   6.2  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   6.2  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    25   8.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   8.2  

>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +1

Query: 271 WAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFSR 372
           W G+  DEP+GKNDG+V+G RYF    K G F R
Sbjct: 183 WVGVEFDEPVGKNDGTVSGKRYFNAKNKHGSFLR 216



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 640 VLQISRRAFXAGVELDDSLGKNDGSV 717
           V +I+      GVE D+ +GKNDG+V
Sbjct: 174 VPEINNDNLWVGVEFDEPVGKNDGTV 199


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 25/61 (40%), Positives = 33/61 (54%)
 Frame = +1

Query: 190 IGERVWVGGTKPGTNRLYWRNAFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFS 369
           +G+ V + G + G  R      F  G W G+ L    GKNDGSV G RYF C + +G+F 
Sbjct: 6   VGDEVLIRG-ELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSCEKGKGIFV 64

Query: 370 R 372
           R
Sbjct: 65  R 65



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 570 IRTGDRVIVSSSRGSKAGILRFVGPTDFAPGI 665
           +  GD V++   RG + GI+RF G TDF  GI
Sbjct: 4   LSVGDEVLI---RG-ELGIVRFAGSTDFESGI 31


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 43  ENHKMPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTEDTDSFIIGE 198
           EN  +PV +KI+    +  DTL +++D LSR H+S  +  + + + S I GE
Sbjct: 118 ENENLPV-SKIA-EVTNELDTLVRINDQLSRNHISGTTEEM-QSSSSLIAGE 166


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 296 QLVKTMDQWQAFVIFNVQRNEVCFLD*LGSLEFPSLYTHRTMHRPCRM 439
           Q V  + Q   F++F +  N  C+LD   +    +LY +     PC M
Sbjct: 500 QFVHNLSQKLLFLVFQLSTNTNCYLDSKNATSLLALYINALKVFPCLM 547


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 55  MPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTED 174
           +P++ K+S S  SST +++ L  + ++KH+  HS I   D
Sbjct: 855 LPMKKKLSHSSASSTRSIKSLLTNANQKHI--HSSINETD 892


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 245 QYKRFVPGFVPPTQTRSPIMKLSVSSVNITLWSDRCF 135
           +Y+ ++P F+PPT +R+ +   ++   N TL  D  F
Sbjct: 700 KYRVYLPQFLPPTDSRTLVEFQTIVYTNSTLLFDGSF 736


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
 Frame = +3

Query: 315 ISGRRSLFSMSRETRCVFSIDSAH*SSLRYTHTARCIARVGCGERVRTTSFRR-GSSQAD 491
           IS   S  S    T    S  S+  SS   T ++  ++         T+S     SS + 
Sbjct: 290 ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSS 349

Query: 492 PLAKWNIRSIVSSKMNASISTTTNGDIRTGDRVIVSSSRGS 614
           P +     +  SSK ++S S+T +    T    + SSS  S
Sbjct: 350 PSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSS 390


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 4   SRTNSIIQRIIFFENHKMPV--ETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTED 174
           S  N I  +  F +N  + +  E  +   D  STD L+K  D   + HL + +VI   D
Sbjct: 588 SNFNEIESQASFEQNQTLDILSENIVEIQD-KSTDPLQKSLDSSLKSHLPEATVIQNTD 645


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 349 EKRGVFSRLTRLTRVPFAIHTPH--DASPVSDAGS-VFERPPSGAARPKRT 492
           EK+G   R T+    P   H PH  D S +   GS + ER      RP  T
Sbjct: 23  EKKGSIDRKTKNKAYPSTTHDPHQNDDSNIPGLGSGLLERIKDIVQRPTDT 73


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 683 SSTPAXNARREICRTYETQNTSFASAAA*YNNTITRSNISIGRCG 549
           SS+P  +    I  +  +  +SF S+++ Y  T+T SN S+   G
Sbjct: 290 SSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTG 334


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 266 PGANAFLQYKRFVPGFVPPTQTRSPIMKLS 177
           P A+ F  Y     GF+P +   SP+M LS
Sbjct: 287 PPASTFPSYNSNFTGFLPSSFNPSPLMTLS 316


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +3

Query: 282 STRRANW*KRWISGRRSLFSMS---RETRCVFSIDSA 383
           S  R+N  +  I GRR++FS+S   +E R +F++ SA
Sbjct: 194 SLERSNLKRLHIVGRRNIFSVSFTIKELRELFALSSA 230


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 314 PSFLPIGSSSTIPAHSPGANAFLQYKRFV 228
           P+ LP  SSS++P  +   N+F  Y+R V
Sbjct: 180 PTPLPPPSSSSLPTGTISTNSFCPYERKV 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,362
Number of Sequences: 5004
Number of extensions: 69407
Number of successful extensions: 230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)