Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0758
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597... 57 2e-08
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 40 0.001
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473... 30 2.1
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 29 2.8
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 29 3.7
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963... 29 3.7
05_03_0262 - 11222790-11222792,11222848-11222965,11223218-112233... 29 3.7
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 28 6.4
09_02_0363 - 7871730-7871853,7871986-7872075,7872720-7872799,787... 28 6.4
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 28 8.5
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182... 28 8.5
>04_04_1698 -
35458500-35458547,35458919-35458988,35459626-35459759,
35460671-35460712,35460786-35460824
Length = 110
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +1
Query: 190 IGERVWVG-GTKPGTNRLYWR-NAFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 363
+G+R V G K GT + R A G W G+ DEP+GK+DG V G+R+F+CP+ G
Sbjct: 28 VGDRCEVEPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIRFFECPQGHGA 87
Query: 364 FSR 372
R
Sbjct: 88 IVR 90
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 658 RAFXAGVELDDSLGKNDGSV 717
R F GV+ D+ LGK+DG V
Sbjct: 54 RGFWVGVQYDEPLGKHDGMV 73
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 181 SFIIGERVWVGG--TKPGTNRLYWRNAFAPGEWAGIVLDEPIG-KNDGSVAGVRYF-QCP 348
+F +G+RV G + GT R PG+W G+ D G ++DGS+AG RYF
Sbjct: 5 AFRLGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAG 64
Query: 349 EKRGVFSRLTRLT 387
E+ F+R T L+
Sbjct: 65 ERSASFARPTALS 77
>01_01_0628 -
4731052-4731601,4731825-4732782,4733143-4733953,
4734038-4734241,4734695-4734802,4735930-4736369,
4736463-4736541
Length = 1049
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 390 SSEPSQSRKHTSFLWTLKITNACH 319
SS+ S H LWTLK N+CH
Sbjct: 502 SSKKEVSIVHNIILWTLKFANSCH 525
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 439 AGSVFERPPSGAARPKRTLSPNGIFAVLSAV 531
A SV RPP G+AR + SP G+ + +
Sbjct: 18 AASVLRRPPRGSARREEESSPEGVVGYVELI 48
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 43 ENHKMPVETKISFSDGSSTDTLRKLSD 123
E ++ P T +S SDG+STD + K SD
Sbjct: 1237 EANQKPENTTLSCSDGTSTDVIDKQSD 1263
>05_03_0657 + 16694833-16694963,16695567-16695684,16696280-16696376,
16700126-16700232,16700473-16700595,16700791-16700944,
16701237-16701297,16701417-16701781,16701875-16703483,
16703697-16703940
Length = 1002
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 468 RRGSSQADPLAKWNIRSIVSSKMNASISTTTNGDIRTGDRVIVSSSRGSKAGILRFVG 641
+RGSS+ P NI S S + +++ TT G R DR+ V+ + +L F G
Sbjct: 861 QRGSSKNSPRQLINIVSGRWSPFHDTVAPTTGGSPRENDRLKVARRQKCFTEVLSFDG 918
>05_03_0262 -
11222790-11222792,11222848-11222965,11223218-11223318,
11223389-11223525,11225603-11225759,11225846-11225959,
11226349-11226477
Length = 252
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 320 TDPSFLPIGSSSTIPAHSPGANAFLQYKRFVPGFVPPTQTRSPIMKLSVSSVN 162
TDP LP S+ST + P +Y+R +P + + + +S+S VN
Sbjct: 2 TDPETLPSPSASTDSSSPPPDAWAAEYRRLLPQWESMRDSSKIAIPISISRVN 54
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = -1
Query: 544 EAFILLLTILRIFHLARGSAWDEPRRKEVVRTRSPHPTRAMH 419
E LLLT I LA AW E R EV HP A H
Sbjct: 345 ETSALLLT-WAIMLLATNPAWQEKARTEVAAVCGDHPPSADH 385
>09_02_0363 -
7871730-7871853,7871986-7872075,7872720-7872799,
7872881-7872964,7874944-7874992,7875114-7875240,
7875798-7875934,7876004-7876050,7876126-7876185,
7876810-7876862,7878205-7878269,7879050-7879174,
7879307-7879366,7879670-7879806,7880737-7880805,
7880889-7881045,7881121-7881235,7881855-7881916
Length = 546
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +1
Query: 7 RTNSIIQRIIFFENHK-MPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTEDT-- 177
R ++Q+ FF +H+ P+ + FSD S D + D + + D V +T+D
Sbjct: 404 RNRQLLQKRQFFHSHRAQPMALEQVFSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKL 463
Query: 178 -----DSFIIGERVWVGGTKP 225
+SF+ +RV G P
Sbjct: 464 IMHMWNSFVRKQRVLADGHIP 484
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 506 PFGERVRLGRAAPEGGRSNTLPASDTGDASCGVCIAKGTLVSRVNR 369
P G+R GR A GGR++ PA D D A+G R R
Sbjct: 834 PNGQR-GFGRGATRGGRNHDHPAEDHEDPDAAQGFARGGPAPRGGR 878
>02_04_0289 +
21615745-21616155,21617417-21617870,21618162-21618217,
21618307-21618437,21618565-21618727
Length = 404
Score = 27.9 bits (59), Expect = 8.5
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = +1
Query: 133 RKHLSDHSVILTEDTDSFIIGERVWVGGTKPGTNRLYWRNAFAP-GEWAGIVLDEPIGKN 309
R+ D +DS ++VGG P R AFA G+ A + + P+GK
Sbjct: 285 RRSSGDSGSSPPRQSDSDSTNRTIYVGGLDPNATEDELRKAFAKYGDLASVKI--PVGKQ 342
Query: 310 DGSVAGVRYFQCPEKRGVFSRLTRLTRVPFAIHTPHDASPVSDAGSVFE 456
G V++ P+ L T A+ SP S F+
Sbjct: 343 CGF---VQFVNRPDAEEALQGLNGSTIGKQAVRLSWGRSPASKQVGTFD 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,043,559
Number of Sequences: 37544
Number of extensions: 481327
Number of successful extensions: 1532
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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