Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0758
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 61   VETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVI 162
            + T  + S GSS D  R LS+ +     SD+S +
Sbjct: 1312 IATNTTVSSGSSEDHRRPLSEHIYSSIDSDYSTL 1345


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 582 HPFEYLHWSLW 550
           HP+++L W+ W
Sbjct: 466 HPYDHLVWNSW 476


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 94  STDTLRKLSDDLSRKHLSDHSVILTEDT 177
           S DTLRK++ +     L+  +V LT+ T
Sbjct: 898 SPDTLRKIAQNRGTNPLAPDAVDLTQLT 925


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 337 FQCPEKRGVFSRLTRLTRVPFAIHTPHDASPV 432
           F+C     + + LTRL R    +HT     P+
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPI 34


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 584 ITRSNISIGRCGN*SIHLTADNTANIPFG 498
           +   N+  GRC    + + +D  ANI  G
Sbjct: 448 VISGNLEKGRCTGKIVTVGSDGNANIEIG 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,239
Number of Sequences: 438
Number of extensions: 4600
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)