Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0758
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10220.1 68416.m01223 tubulin folding cofactor B identical to...    54   7e-08
At5g37630.1 68418.m04532 chromosome condensation family protein ...    33   0.25 
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin...    32   0.44 
At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger) fa...    31   0.76 
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa...    29   2.3  
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa...    29   2.3  
At5g66710.1 68418.m08409 protein kinase, putative similar to pro...    28   5.4  
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ...    28   7.1  
At3g10760.1 68416.m01295 myb family transcription factor contain...    27   9.4  
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ...    27   9.4  

>At3g10220.1 68416.m01223 tubulin folding cofactor B identical to
           tubulin folding cofactor B GI:20514259 from [Arabidopsis
           thaliana]; identical to cDNA tubulin folding cofactor B
           GI:20514258
          Length = 243

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +1

Query: 190 IGERVWVG-GTKPGTNRLYWR-NAFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRG 360
           +G+R  V  G K G  +   R  +  PG W GI  DEP+GK+DG V G R+F+CP  +G
Sbjct: 161 VGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPRLQG 219


>At5g37630.1 68418.m04532 chromosome condensation family protein
           contains pfam profile: PF04154 chromosome condensation
           protein 3, C-terminal region
          Length = 1051

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +1

Query: 67  TKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTEDTDSFIIGERVWVGGTK---PGTNR 237
           T + FSD     T+     +L R+        L ED +S +IG+ + +GG K      ++
Sbjct: 447 TMLDFSDAMLHKTVSSFVQELLRRPFEQE---LDEDGNSIVIGDGINLGGDKDWAEAVSK 503

Query: 238 LYWRNAFAPGEWAGIVL 288
           L  +   APGE+  ++L
Sbjct: 504 LAKKVHAAPGEYEEVIL 520


>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
           (PFI) almost identical to tubulin folding cofactor E
           (Pfifferling; PFI) GI:20514267 from [Arabidopsis
           thaliana]; identical to cDNA tubulin folding cofactor E,
           GI:20514266
          Length = 531

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 178 DSFIIGERVWV--GGTKPGTNRLYWRNAFAPGEWAGIVLDEP-IGKNDGSVAGVRYF 339
           +SFIIG+RV       + GT +         G W G+  D+   GK++GSV GV YF
Sbjct: 8   ESFIIGQRVHSLNDSRRVGTVKYVGDVEGYSGTWIGVDWDQDGDGKHNGSVNGVFYF 64


>At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 132

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 347 QRNEVCFLD*LGSLEFPSLYTHRTMHRPCRMRGACSNDLLPARLVPSGPSRQME 508
           +RNE   +    S+ F + Y      R CR R A + D+  AR+ P  P R ++
Sbjct: 5   KRNEGTIVFAFASIGFIAFYIINYYIRRCRNRAAAAGDIEEARMSPRRPPRGLD 58


>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 711

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 293 SSSTIPAHSPGANAFLQYKRFVPGFVPPTQTRSPIMKLSVSSVNIT 156
           S++ I   SP   A  + +    G V PT+ RSP+  LSVSS + T
Sbjct: 67  SATAISTPSPSLPASPKLQCDTSGDVTPTRNRSPLSFLSVSSSSST 112


>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 739

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 293 SSSTIPAHSPGANAFLQYKRFVPGFVPPTQTRSPIMKLSVSSVNIT 156
           S++ I   SP   A  + +    G V PT+ RSP+  LSVSS + T
Sbjct: 67  SATAISTPSPSLPASPKLQCDTSGDVTPTRNRSPLSFLSVSSSSST 112


>At5g66710.1 68418.m08409 protein kinase, putative similar to
           protein kinase ATN1 GP|1054633 [Arabidopsis thaliana]
          Length = 405

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  SSTDTLRKLSDDLSRKHLSDHSVILTEDTDSFIIGERV 204
           S T+ LR LS D      +  + I TED+ S ++ ERV
Sbjct: 329 SLTNLLRSLSSDTDATSSNSKANIATEDSTSSLVQERV 366


>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
           protein predicted proteins, Arabidopsis thaliana
          Length = 381

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 127 LSRKHLSDHSVILTEDTDSFI--IGERVWVGGTKPGTNRLY 243
           + R H   HSVIL ED   F+   GER   G    G+ ++Y
Sbjct: 269 IDRPH-GQHSVILAEDVSKFVEYTGERSEHGAILAGSRQVY 308


>At3g10760.1 68416.m01295 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 335

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 326 PATDPSFLPIGSSSTIPAHSPGANAFLQYKRFVPGFVP 213
           PATD  F    +SS +PAH    N       F+P FVP
Sbjct: 176 PATDRLF----ASSPVPAHFLHPNRVPSSDHFMPSFVP 209


>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 536

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 127 LSRKHLSDHSVILTEDTDSFI--IGERVWVGGTKPGTNRLY 243
           + R H   HSVIL ED   F+   GER   G    G+ ++Y
Sbjct: 281 VDRPH-GQHSVILAEDASKFVEYTGERNEHGAILAGSRQIY 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,702,332
Number of Sequences: 28952
Number of extensions: 372819
Number of successful extensions: 1157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)