Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0756
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 161 1e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 3e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 4e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 6e-14
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 35 0.014
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.033
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.23
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.31
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.54
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 29 0.72
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.95
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 2.2
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 3.8
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.8
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 161 bits (390), Expect = 1e-40
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHALLA+TLGVKQLIV VNKM
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKM 155
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 71.7 bits (168), Expect = 1e-13
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 525 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 665
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 160 bits (389), Expect = 2e-40
Identities = 74/84 (88%), Positives = 79/84 (94%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHALLA+TLGVKQLIV VNKM
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKM 155
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 71.7 bits (168), Expect = 1e-13
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 525 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 665
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 160 bits (389), Expect = 2e-40
Identities = 74/84 (88%), Positives = 79/84 (94%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHALLA+TLGVKQLIV VNKM
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKM 155
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 71.7 bits (168), Expect = 1e-13
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 525 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 665
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 3e-21
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + G
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHA+LA T G+ L+V +NKM
Sbjct: 363 QTREHAVLARTQGINHLVVVINKM 386
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 237 AERE 248
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.1 bits (221), Expect = 4e-20
Identities = 44/84 (52%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NG
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENG 301
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHA L LG+ +++V VNK+
Sbjct: 302 QTREHAYLLRALGISEIVVSVNKL 325
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 237 AER 245
ER
Sbjct: 235 EER 237
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 525 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLE 650
+SE RF+EIK VS + IK +G+ + V FVPIS G N+++
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.5 bits (170), Expect = 6e-14
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 103 TISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP------- 155
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREH LLA +GVKQ++V +NK+
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKV 179
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 137
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 298 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 477
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 478 KQLIVGVNKM 507
K +I+ NK+
Sbjct: 163 KHIIILQNKV 172
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 280 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 450
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.72
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI 146
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 280 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 271 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
TI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 80 TINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.95
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCG 140
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.72
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +1
Query: 388 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYP 567
VA GT E GI NG E+A+ A +I V++ P++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 568 HTSRRLATTQLLSLSCPFL 624
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 238 LSVSRYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+S+ + +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 190 MSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = -1
Query: 288 SFELPESNIDCVPTHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWW 109
S L N D + V +PK I I++ F P S S C+Y S+D W
Sbjct: 12 SSNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71
Query: 108 WT 103
T
Sbjct: 72 RT 73
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +1
Query: 553 RRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQ----PKWPWVQ---XDWQVERXERQ 711
R K+ + + +Q+LS +LD T W ++ PK+P ++ +WQV++ +
Sbjct: 38 REKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKRNRPPKYPLLEAALFEWQVQQGDDA 97
Query: 712 N*XENASLKLSDAIL 756
++K + AIL
Sbjct: 98 T-LSGETIKRAAAIL 111
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 526 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 615
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 259 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 345
I+I + E +++ T+ID PG DFI N
Sbjct: 73 IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,676
Number of Sequences: 5004
Number of extensions: 66147
Number of successful extensions: 232
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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