Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0756
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             114   8e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          101   8e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                99   4e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   2e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.44 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.0  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.3  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.3  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   7.1  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)                       28   7.1  
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  114 bits (274), Expect = 8e-26
 Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +1

Query: 259 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 438
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 439 TREHALLAFTLGVKQLIVGVNK--MVPLNHHTVSP 537
           TREHA+L  +LGV QLIV +NK  MV L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  101 bits (241), Expect = 8e-22
 Identities = 43/84 (51%), Positives = 61/84 (72%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
           QTREHA+LA T GVK L++ VNKM
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKM 292



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +3

Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +3

Query: 525 YSEPRFEEIKKEVSSYIKKIGYNP 596
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 51/74 (68%), Positives = 54/74 (72%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+   S      +
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59

Query: 225 DKLKAERESVHNRY 266
            KLK E    H  Y
Sbjct: 60  SKLKFELPCTHKIY 73


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 366
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 189 MGKGSFKYAWVLDKLKAERE 248
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 310 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 489
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 490 VGVNKM 507
           +  NK+
Sbjct: 123 ILQNKI 128


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  THINIVVIGHVDSGKSTTTGHLIY 131
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 69   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 167
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 465 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
           H   + + RR ++N   +   + P+FE++K + +S  KKI  N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 396
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 510  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 650
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
          Length = 125

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +3

Query: 435 SNP*ACLARFHPRC-----QTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
           +N  A L RF   C     ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 25  NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82


>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 465 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
           H   ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 8   HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,561,920
Number of Sequences: 59808
Number of extensions: 505540
Number of successful extensions: 1607
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)