Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0755
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0085 - 19905784-19906510,19907428-19907557,19907739-19907874     30   1.6  
01_05_0584 + 23435620-23436408,23436966-23437508                       28   8.4  

>11_06_0085 - 19905784-19906510,19907428-19907557,19907739-19907874
          Length = 330

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 403 NYNHNSIQTYNSN*F*SNFDCCGTSSPNKYNNSPKPRNTRNY 278
           +++H+S QT  S+   SN     T+SPN YN +    N+ NY
Sbjct: 130 HHHHHSFQTTPSS---SNAAAVATTSPNYYNPNNSNSNSSNY 168


>01_05_0584 + 23435620-23436408,23436966-23437508
          Length = 443

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +1

Query: 28  SNIICSIRITKLTL*HRDLYKRRVNCEKTHNLLGNTPTRRIARCPTLIIYRTLVQLMICP 207
           S+++CS+      +    +Y   V  + T NL       RIA   TLI       L+I P
Sbjct: 268 SSVLCSLNYAVTAVLGYKIYGEDVQAQVTLNLPTGKLYTRIAILTTLITPLAKYALVIQP 327

Query: 208 VKLAFDRK 231
           V  A + K
Sbjct: 328 VTTAIEEK 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,743
Number of Sequences: 37544
Number of extensions: 311320
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)