Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0755
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38205| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)               29   2.8  

>SB_38205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -1

Query: 143 RVGVFPSKLWVFSQFTRRLYRSRCQSVSFVIRIEHIILDCVYL 15
           R  V P+K  + S  TRR   ++ + +S  + ++++I++CVYL
Sbjct: 161 RTCVVPAKYSLRSGTTRRTQMTKTKRLSDFVTVKYLIVNCVYL 203


>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
          Length = 671

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 25  QSNIICSIRITKLTL*H--RDLYKRRVNCEKTHNLLGNTPTRRIARCPTLIIYRTLVQLM 198
           ++NIICS+ I K  + H  RD  +   +C     +L N    R+ +C  + + +  ++ M
Sbjct: 35  EANIICSVAIGKEDISHNNRDPLEYHCSCAGI-GVLANQHHLRVHKCRDVSLKKDAIKTM 93

Query: 199 I---CPVKLA 219
           +   CP K A
Sbjct: 94  LNHQCPTKSA 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,683,964
Number of Sequences: 59808
Number of extensions: 422655
Number of successful extensions: 865
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)