Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0755
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    32   0.43 
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    29   2.3  
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea...    29   2.3  

>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 182 VLYIISVGHLAIRRVGVFPSKLWVFSQFTRRLYRSRCQSVSFVIRIEHIILDCVYLN 12
           V YI+  GH+  +R  VF  +L V   ++    R  C+S   ++ I HI L  V +N
Sbjct: 718 VAYIVGHGHVKAKRNSVFVKQLVVNVAYS--FLRKNCRSPGVMLNIPHICLIKVGMN 772


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 529 VCMRVCVKYMVCSVCNVFFIGFKVSFMHYLKKY*HWALLLYIS 657
           +C   C+K + C  CN F + FK   + Y  KY H    L IS
Sbjct: 469 ICKTECLKQLNCIKCN-FIVCFKCVTLPYKIKYKHDTHFLTIS 510


>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
           family protein similar to splicing factor hPRP17
           (gi|3283220); contains 7 WD-40 repeats (PF00400);similar
           to ESTs emb|F15435 and dbj|AUO62661
          Length = 573

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 148 YGA*VCSRVNCGFSRNLRDVCIGLD-VRVLVL*YE*NILYW 29
           Y +  C R   G ++ +RD+C   D  + L   Y+ NI YW
Sbjct: 313 YNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYW 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,548
Number of Sequences: 28952
Number of extensions: 281092
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)