Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0753
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 176 2e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 3e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 94 2e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 91 2e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 1e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 3e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 2e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.014
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 32 0.099
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.23
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.70
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 2.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.8
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.7
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 3.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.9
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 26 4.9
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 6.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 8.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 8.6
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 176 bits (429), Expect = 2e-45
Identities = 78/87 (89%), Positives = 81/87 (93%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 427
G +DSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 428 APLNPKANREKMTQIMFEXFNTPAMYV 508
APLNPK+NREKMTQI+FE FN PA YV
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYV 134
Score = 101 bits (241), Expect = 1e-22
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQ+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
Score = 76.2 bits (179), Expect = 5e-15
Identities = 40/51 (78%), Positives = 41/51 (80%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGLRTSPTPSCVWDLAGRDL 663
IQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEG P DLAGRDL
Sbjct: 136 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGY-ALPHAIMRLDLAGRDL 185
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 96.7 bits (230), Expect = 3e-21
Identities = 39/92 (42%), Positives = 64/92 (69%)
Frame = +2
Query: 233 RDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 412
+ G +D VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 413 VLLTEAPLNPKANREKMTQIMFEXFNTPAMYV 508
+LLTE P+NP ANREKM + MFE + +YV
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYV 134
Score = 58.8 bits (136), Expect = 8e-10
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGLRTSPTPSCVWDLAGRDLHR 669
IQAVLSLYA G ++G+V+DSGDGV+H VP+YE + + + D+AGRD R
Sbjct: 136 IQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRL-DVAGRDATR 187
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 117 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 221
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Frame = +2
Query: 254 EDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEA 430
+D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 54 KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP 113
Query: 431 PLNPKANREKMTQIMFEXFNTPAMYVPSKP 520
PL N+EK+ + +E N PA+ +P
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/51 (52%), Positives = 39/51 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGLRTSPTPSCVWDLAGRDL 663
+Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G + P+ ++ GRD+
Sbjct: 141 LQPVLALYASARTTGIVLECGDGLTHSVPIYDGF-SIPSAIQQEEIGGRDV 190
Score = 55.6 bits (128), Expect = 7e-09
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTL 263
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM Q+ +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 91.1 bits (216), Expect = 2e-19
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 433
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 434 LNPKANREKMTQIMFEXFNTPAMYV 508
LNP NRE +IMFE FN +Y+
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYI 157
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 212
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 39.1 bits (87), Expect = 7e-04
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Frame = +1
Query: 511 IQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGLRTSPTPSCVWDLAGRDL 663
+QAVL+L AS + TG V+DSGDGV+H +P+ EG + + LAGRD+
Sbjct: 159 VQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTM-PLAGRDV 216
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +2
Query: 233 RDGRYGTEDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 409
RD + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 410 PVLLTEAPLNPKANREKMTQIMFEXFNTPAM 502
P+ +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 224
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 511 IQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGLR 615
I + S Y + + ++GIVL+ G+ SH +P+ G R
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGER 187
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 60.1 bits (139), Expect = 3e-10
Identities = 27/70 (38%), Positives = 38/70 (54%)
Frame = +2
Query: 299 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 478
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 479 EXFNTPAMYV 508
E PA Y+
Sbjct: 123 ESLRCPATYL 132
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 DSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 430
+ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 50 NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109
Query: 431 PLNPKANREKMTQIMFEXFNTPAMYV 508
NP++ R+++ + FE + PA Y+
Sbjct: 110 SWNPQSVRQQIMEAAFEQLHVPAFYL 135
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 514 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGL 612
QAV +A+ ++T +++D G + P+ +GL
Sbjct: 138 QAVCVAFANSKSTALIVDIGSDNASVTPVVDGL 170
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.014
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +2
Query: 314 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 481
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 482 XFNTPAMYVPSKP 520
P + +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 31.9 bits (69), Expect = 0.099
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +2
Query: 377 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFEXFNTPAMYVPSKPCSRCTRPVVPPV 556
Y+EL +A +E P L P PK + + N A + KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENNIASF--QKPSSKATRPYIPSY 78
Query: 557 SCWTPATVSPTPCPSTKDYAL 619
+ T +V P P P + +L
Sbjct: 79 TRLT-YSVPPLPIPPPSEQSL 98
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 374 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFEXFNTP 496
+Y L E+HP+LLT+ A L P+ + ++ +I + NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 0.70
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 346 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLCPIPTITP*WRGLPTIEGNTARGASSPAK 167
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 166 PALHIP 149
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 284 SVPHLLHKSPLSHTDHHALMAGPSHDRGEH 195
+VP L P HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 518 PCSRCTRPVVPPVSCWTPATVSPTPCPST 604
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 603 RRITHFPHAILRLGLSRSRPSQTNFMK 683
RR H+ H ILRL SRS + F++
Sbjct: 104 RRKDHYSHFILRLAFSRSDELRIRFLR 130
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +2
Query: 488 NTPAMYVPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDYALPPRHPAS 640
+TP + S + + P PP P S P P+ A PP PAS
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +3
Query: 477 SKXSTRPPCTSHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRRITHFPHA 629
S+ + P H R R RS HR+ G RR P+R HL R H H+
Sbjct: 124 SRSRSTSPANRH-RRKEKERTRSNHRH--GSHRRHEPYRTHLSR--HHRHS 169
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 244 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 110
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 250 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 158
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 409 PSPAH*GSPQPQGQQ----REDDPDHVRXIQHARHVRPIQAVLSLYASGRTTGIVLD 567
P P H G+ +G++ RED P++ R ++ + + I + Y TG+ D
Sbjct: 312 PKPVH-GTSNGKGKKNPVLREDQPEYQRAVRRMQRKKEIDLMDEDYLPSLLTGVTKD 367
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 633 GWRGGSA*SFVDGHGVGDTVAGVQHDTGGTTGR 535
G RGG S G G GDTV GG GR
Sbjct: 128 GGRGGRYGSS-GGRGAGDTVVSRSSGAGGARGR 159
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.5
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +2
Query: 419 LTEAPLNPKANREKMTQIMFEXFNTPAMYVPSK----PCSRCTRPVVPPVSCWTPATVSP 586
L P PK + K + + P + VPS P T PV P S P+ P
Sbjct: 1008 LARVPPVPKLS-SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPV-PKSSSGAPSAPPP 1065
Query: 587 TPCPSTKDYALP 622
P PS++ ++P
Sbjct: 1066 VPAPSSEIPSIP 1077
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 566 TPATVSPTPCPSTKDYALPP--RHPASGT*PVATFTD*LHEDSS 691
TPA +P P P+ K + PP R S + P A T H +SS
Sbjct: 728 TPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLT---HANSS 768
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 479 EXFNTPAMYVPSKPCSRCTRPVVPPVSCWTP-ATVSPTP-CP 598
E P+ ++ +K SR P+ PP S P T+S CP
Sbjct: 162 EHLTPPSSFITAKQLSRLPTPLPPPSSSSLPTGTISTNSFCP 203
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 276 SSPT*ESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 115
SSP+ +SS S G RSR + H + RP + S + P +L
Sbjct: 61 SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,266
Number of Sequences: 5004
Number of extensions: 70867
Number of successful extensions: 222
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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