Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0752
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525...    28   7.3  
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    28   7.3  

>06_03_0931 -
           26052135-26052176,26052273-26052377,26052489-26052584,
           26052686-26052757,26052879-26052974,26053054-26053155,
           26053258-26053347,26053452-26053535,26053623-26053697,
           26053847-26053930,26054012-26054242
          Length = 358

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233 RNAAVAVNRVRHMRNSCDGMFVRLVHF*-FQNETIKRTNAPVRSVVYVILYVPC 391
           RNA +A + +  +R     + V+L  F   Q   +KR  AP +SVV+  L++ C
Sbjct: 196 RNAFLAASCILFVR----AVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCC 245


>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 70  IYTLRRGGDFCDWTHKFFGPGNFKIFHMFIGFA 168
           I+ ++R    C W +   G  N+KIF +F+ +A
Sbjct: 86  IHEIKRKDHHCIWINNCVGHENYKIFLVFVLYA 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,952
Number of Sequences: 37544
Number of extensions: 208865
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)