Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0752
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine re...    29   2.1  
AF125959-3|AAD14731.1|  531|Caenorhabditis elegans Udp-glucurono...    28   4.9  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine
           receptor, class z protein82 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 409 FVKTNYNISYGVFI*TLYVLT*TVYAKSRWTDFDNY 516
           +++  Y I +G  +  +Y  + T+++KSRWT F+ Y
Sbjct: 149 YIRLFYLICFGTEL-IMYFYSPTIWSKSRWTTFELY 183


>AF125959-3|AAD14731.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein14 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 353 VRSVVYVILYVPCAILKFYSLKRIIIFHMVFLFKHYMF 466
           V+++VY +L+       F S K I+IF+ +F F H  F
Sbjct: 3   VKTLVYFLLFTG-----FISCKNILIFNPIFAFSHVKF 35


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 156 EHMKNFKISRTKKFMRPITKVSSSPQCIYVKL 61
           E + N  IS+TK   + +TKVS++ + +  KL
Sbjct: 579 EKISNITISKTKPLKKAVTKVSAAKKILNKKL 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,219
Number of Sequences: 27780
Number of extensions: 216236
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)