Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0749
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              44   1e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    39   4e-05
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    39   4e-05
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +2

Query: 5    SNMRTGFTEEDVPSEPPLSVTAGVINATSAWIRWEAPPVYAWNGEISGYLI 157
            S+  T  T E+ PS PP S+    ++  +  + W+ PP   WNGEI GY +
Sbjct: 964  SDTVTIITAEEAPSGPPTSIRVDDLDQHTLKVTWKPPPREDWNGEILGYYV 1014



 Score = 41.5 bits (93), Expect = 7e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 5    SNMRTGFTEEDVPSEPPLSVTAGVINATSAWIRWEAPPVYAWNGEISGYLI 157
            S  R   T E VP +PP   T   + + +  I W +PP+ A NG I+GY +
Sbjct: 1069 SEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWMSPPLSAANGVITGYKV 1119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 26   TEEDVPSEPPLSVTAGVINATSAWIRWEAPPVYAWNGEISGY 151
            T EDVPS PP  V    + + S  + W+ PP    NG I GY
Sbjct: 1106 TMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGY 1147



 Score = 29.9 bits (64), Expect = 0.024
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 26   TEEDVPSEPPLSVTAGVINATSAWIRWEAPPVYAWNGEISGY 151
            TE   P+ PP+++ A  ++++   I W  P     +G+I G+
Sbjct: 1001 TEPQRPAGPPINLEARALSSSEILITWSPPLPELRHGDIQGF 1042



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 205  HLSHYSTSSGSTNANFDQISGD 140
            ++ +  TSS + + NF  +SGD
Sbjct: 1043 NVGYRETSSSNPSYNFSSVSGD 1064


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 26   TEEDVPSEPPLSVTAGVINATSAWIRWEAPPVYAWNGEISGY 151
            T EDVPS PP  V    + + S  + W+ PP    NG I GY
Sbjct: 1102 TMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGY 1143



 Score = 29.9 bits (64), Expect = 0.024
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 26   TEEDVPSEPPLSVTAGVINATSAWIRWEAPPVYAWNGEISGY 151
            TE   P+ PP+++ A  ++++   I W  P     +G+I G+
Sbjct: 997  TEPQRPAGPPINLEARALSSSEILITWSPPLPELRHGDIQGF 1038



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 205  HLSHYSTSSGSTNANFDQISGD 140
            ++ +  TSS + + NF  +SGD
Sbjct: 1039 NVGYRETSSSNPSYNFSSVSGD 1060


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 272 ELQPSPSEVTDLSARYLIFTWFLH 343
           ++ P  S V  L A+YL+FT+ ++
Sbjct: 284 KILPPTSLVLPLIAKYLLFTFIMN 307


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 272 ELQPSPSEVTDLSARYLIFTWFL 340
           E+ PS S    L  +YL+FT  L
Sbjct: 286 EIIPSTSLALPLLGKYLLFTMIL 308


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +2

Query: 332 WFLHKLRDI 358
           WFLHK+++I
Sbjct: 279 WFLHKMKNI 287


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/48 (18%), Positives = 14/48 (29%)
 Frame = -3

Query: 342 CRNHVKMR*RAERSVTSLGDGCSSCAVPTSARKELAAAALVLGPSDIC 199
           C  +  +R          GD C  C    +            GP ++C
Sbjct: 22  CSGYPSIRQGTTSYCLGCGDSCHKCKYGIAMSSACGIVQCAKGPDELC 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,573
Number of Sequences: 438
Number of extensions: 3426
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)