Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0749
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22380.1 68416.m02825 expressed protein                             29   3.9  
At1g71530.2 68414.m08270 protein kinase family protein contains ...    29   3.9  
At1g71530.1 68414.m08269 protein kinase family protein contains ...    29   3.9  
At5g25770.2 68418.m03059 expressed protein                             28   5.2  
At5g25770.1 68418.m03058 expressed protein                             28   5.2  
At2g33480.1 68415.m04104 no apical meristem (NAM) family protein...    28   6.8  
At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM ...    28   6.8  

>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +3

Query: 228  QQQLVPCVLRSVQRKSCSRHQARSRTFQPAISFSHGSYTNSETLRANGTSHRQSNNIDVP 407
            QQ      L+  QR + S   + +RT  P +S   G   ++ T    GT+   + N   P
Sbjct: 1194 QQPYTTMYLQKQQRYATSVAASAARTKGPVVSNGSGFPDHNMTTSPAGTTKFANANSGFP 1253

Query: 408  RNLALSTQCNIVS 446
            +NL  S+   + S
Sbjct: 1254 QNLVQSSSNQVQS 1266


>At1g71530.2 68414.m08270 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 463

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 203 MSLGPKTRAAAASSLRAEVGTAQELQPSPSEV 298
           +++ P+ R +AAS+LR+E  T + L  +PS +
Sbjct: 412 LAIEPEKRGSAASTLRSEFFTTEPLPANPSNL 443


>At1g71530.1 68414.m08269 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 463

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 203 MSLGPKTRAAAASSLRAEVGTAQELQPSPSEV 298
           +++ P+ R +AAS+LR+E  T + L  +PS +
Sbjct: 412 LAIEPEKRGSAASTLRSEFFTTEPLPANPSNL 443


>At5g25770.2 68418.m03059 expressed protein
          Length = 418

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 294 RSRTFQPAISFSHGSYTNSETLR 362
           RS   +PAI F HG+ TN E LR
Sbjct: 152 RSEEKRPAIVFMHGTNTNKEWLR 174


>At5g25770.1 68418.m03058 expressed protein
          Length = 360

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 294 RSRTFQPAISFSHGSYTNSETLR 362
           RS   +PAI F HG+ TN E LR
Sbjct: 94  RSEEKRPAIVFMHGTNTNKEWLR 116


>At2g33480.1 68415.m04104 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 268

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 268 RCTDLS-TQGTSCCCPSFGT*RHLSHYSTSSGSTNANFDQIS 146
           RC DL+ T  T CCC S  +   +   + +  S+N N  +IS
Sbjct: 217 RCCDLNLTPATCCCCSSSTSSSSVCSSALTHTSSNDNRQEIS 258


>At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM
           TIGR01568 : uncharacterized plant-specific domain
           TIGR01568
          Length = 244

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 190 STSSGSTNANFDQISGDFSVPRVNRRCFPSNPSR 89
           +TSS ST++    IS D S    +RR F S+P R
Sbjct: 79  ATSSSSTSSYESDISPDVSAAFASRRFFFSSPGR 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,868
Number of Sequences: 28952
Number of extensions: 264823
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)