BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0749 (698 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g22380.1 68416.m02825 expressed protein 29 3.9 At1g71530.2 68414.m08270 protein kinase family protein contains ... 29 3.9 At1g71530.1 68414.m08269 protein kinase family protein contains ... 29 3.9 At5g25770.2 68418.m03059 expressed protein 28 5.2 At5g25770.1 68418.m03058 expressed protein 28 5.2 At2g33480.1 68415.m04104 no apical meristem (NAM) family protein... 28 6.8 At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM ... 28 6.8 >At3g22380.1 68416.m02825 expressed protein Length = 1550 Score = 28.7 bits (61), Expect = 3.9 Identities = 20/73 (27%), Positives = 32/73 (43%) Frame = +3 Query: 228 QQQLVPCVLRSVQRKSCSRHQARSRTFQPAISFSHGSYTNSETLRANGTSHRQSNNIDVP 407 QQ L+ QR + S + +RT P +S G ++ T GT+ + N P Sbjct: 1194 QQPYTTMYLQKQQRYATSVAASAARTKGPVVSNGSGFPDHNMTTSPAGTTKFANANSGFP 1253 Query: 408 RNLALSTQCNIVS 446 +NL S+ + S Sbjct: 1254 QNLVQSSSNQVQS 1266 >At1g71530.2 68414.m08270 protein kinase family protein contains Serine/Threonine protein kinases active-site signature, PROSITE:PS00108 Length = 463 Score = 28.7 bits (61), Expect = 3.9 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +2 Query: 203 MSLGPKTRAAAASSLRAEVGTAQELQPSPSEV 298 +++ P+ R +AAS+LR+E T + L +PS + Sbjct: 412 LAIEPEKRGSAASTLRSEFFTTEPLPANPSNL 443 >At1g71530.1 68414.m08269 protein kinase family protein contains Serine/Threonine protein kinases active-site signature, PROSITE:PS00108 Length = 463 Score = 28.7 bits (61), Expect = 3.9 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +2 Query: 203 MSLGPKTRAAAASSLRAEVGTAQELQPSPSEV 298 +++ P+ R +AAS+LR+E T + L +PS + Sbjct: 412 LAIEPEKRGSAASTLRSEFFTTEPLPANPSNL 443 >At5g25770.2 68418.m03059 expressed protein Length = 418 Score = 28.3 bits (60), Expect = 5.2 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 294 RSRTFQPAISFSHGSYTNSETLR 362 RS +PAI F HG+ TN E LR Sbjct: 152 RSEEKRPAIVFMHGTNTNKEWLR 174 >At5g25770.1 68418.m03058 expressed protein Length = 360 Score = 28.3 bits (60), Expect = 5.2 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 294 RSRTFQPAISFSHGSYTNSETLR 362 RS +PAI F HG+ TN E LR Sbjct: 94 RSEEKRPAIVFMHGTNTNKEWLR 116 >At2g33480.1 68415.m04104 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; Length = 268 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -2 Query: 268 RCTDLS-TQGTSCCCPSFGT*RHLSHYSTSSGSTNANFDQIS 146 RC DL+ T T CCC S + + + + S+N N +IS Sbjct: 217 RCCDLNLTPATCCCCSSSTSSSSVCSSALTHTSSNDNRQEIS 258 >At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568 Length = 244 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -2 Query: 190 STSSGSTNANFDQISGDFSVPRVNRRCFPSNPSR 89 +TSS ST++ IS D S +RR F S+P R Sbjct: 79 ATSSSSTSSYESDISPDVSAAFASRRFFFSSPGR 112 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,819,868 Number of Sequences: 28952 Number of extensions: 264823 Number of successful extensions: 735 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 735 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -