Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0747
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0444 + 17816207-17817436 31 0.79
07_03_0999 - 23216665-23217419,23217626-23217956 31 0.79
06_03_0334 - 19660526-19661755 31 0.79
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 1.4
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 29 5.6
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 29 5.6
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 28 9.7
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 28 9.7
02_01_0072 - 502785-504038 28 9.7
01_01_1050 + 8283589-8283782,8284551-8284814,8284897-8284912,828... 28 9.7
>11_04_0444 + 17816207-17817436
Length = 409
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 108 ERSEKRPRHIS*AHQRKK*KGRPGNFNDIPKNSSLL 215
ER EKRP A QR+K KG P D P + +L
Sbjct: 317 ERKEKRPEGQKAAKQRQKGKGAPSPLGDKPNQNMVL 352
>07_03_0999 - 23216665-23217419,23217626-23217956
Length = 361
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 108 ERSEKRPRHIS*AHQRKK*KGRPGNFNDIPKNSSLL 215
ER EKRP A QR+K KG P D P + +L
Sbjct: 248 ERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVL 283
>06_03_0334 - 19660526-19661755
Length = 409
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 108 ERSEKRPRHIS*AHQRKK*KGRPGNFNDIPKNSSLL 215
ER EKRP A QR+K KG P D P + +L
Sbjct: 317 ERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVL 352
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = +1
Query: 1 GLSGDKKNIAHGALFLQDNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQE 180
GL + + L +L K D L +E+F L + +D + E++ +KSE+
Sbjct: 614 GLVQQNVQLRNQVHLLSADLDKRDMEL-RESFQIELKKITDDAASRVEKVMKKSEEQAIM 672
Query: 181 ISTISQKTAPYFKKIDEDFRREWSN 255
I ++ + A Y +K+ E+ ++ SN
Sbjct: 673 IESLHRSVAMY-RKLCEEQQKSRSN 696
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 67 F*PGYLAGKVPRGRCFSCHQI 5
F P Y+ GK+ R C CHQ+
Sbjct: 86 FTPIYIDGKLARAECMHCHQV 106
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -2
Query: 437 LXLI*FRNLFHCLDVRVNDALHNRLSTFVDGIEYLSEELDYFVESMR*FLQSLIISDFLV 258
L L+ F N F C ++ A N+L+T V G+E +D +E L + + FL
Sbjct: 322 LELLAFSNKFCCEGLK--SACDNKLATMVSGVEDALSLVDLGLEEAAHLLVAACLQAFLR 379
Query: 257 KLLHSL 240
+L SL
Sbjct: 380 ELPKSL 385
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 551 EKHKPELQEFTNVITDIFKDLTRIIVAQVKELPSLIAQSYRXIVEQISALPILSNLKE-K 727
E++KPE F N + + L IV V S ++ ++ +IS + N KE K
Sbjct: 228 EEYKPEKWMFANEESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAK 287
Query: 728 WNGSGS 745
G GS
Sbjct: 288 EKGKGS 293
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 551 EKHKPELQEFTNVITDIFKDLTRIIVAQVKELPSLIAQSYRXIVEQISALPILSNLKE-K 727
E++KPE F N + + L IV V S ++ ++ +IS + N KE K
Sbjct: 228 EEYKPEKWMFANEESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAK 287
Query: 728 WNGSGS 745
G GS
Sbjct: 288 EKGKGS 293
>02_01_0072 - 502785-504038
Length = 417
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 570 SSGLCFSKKSVIRAAKCATRSSSHLNTP*VRPPR 469
SS L FS +++ A C RSS+ N P V PP+
Sbjct: 232 SSVLVFSMWALVAAVPCQDRSSAATNPP-VAPPK 264
>01_01_1050 +
8283589-8283782,8284551-8284814,8284897-8284912,
8285032-8285389,8285860-8286050,8286108-8286197,
8287399-8287596
Length = 436
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 512 LVAHFAALITDFFEKHKPELQEFTNVITDIFKDLTRIIV 628
L+ L DFF +P+L+ F +V D+ L + IV
Sbjct: 335 LLLDLTRLAQDFFFSRRPDLETFCDVCPDVIVSLQQQIV 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,393,451
Number of Sequences: 37544
Number of extensions: 362150
Number of successful extensions: 1045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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