Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0747
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical pr... 33 0.31
L23649-1|AAA27912.1| 568|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z19153-4|CAA79548.1| 525|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical p... 29 3.8
Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical pr... 29 3.8
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 29 3.8
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 29 3.8
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 29 3.8
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 29 3.8
Z50874-1|CAA90763.1| 377|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical pr... 28 8.8
U64840-6|AAB04964.1| 574|Caenorhabditis elegans Hypothetical pr... 28 8.8
U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z81080-4|CAB03087.2| 224|Caenorhabditis elegans Hypothetical
protein F39H2.4 protein.
Length = 224
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 52 DNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQEISTISQ 198
++L+KS LS ++ N N+LKN+LD L K+ + STIS+
Sbjct: 126 NSLIKSMNNLSHDSMNGQFNSLKNNLDELNIEKKQLEVAIADQSSTISE 174
>L23649-1|AAA27912.1| 568|Caenorhabditis elegans Hypothetical
protein C02C2.4 protein.
Length = 568
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -3
Query: 436 CXSYNSAIFFTVSTYV-LMMLSTIGSVPL*MVSNILAKNWTISLKACDSSFRVLSSVTSW 260
C Y+S F Y L+ L+ + + +S +A ++ A S FR + W
Sbjct: 434 CLMYSSMGTFVSGFYTSLLSLAPQYTATMSAISMFVAMIGRLTTPAVMSMFRKDGTAAEW 493
Query: 259 *NCSILCGSLHRFS*SKELFFG 194
N I C H FS S L FG
Sbjct: 494 QNIFIGCSLAHIFSGSIFLLFG 515
>Z19153-4|CAA79548.1| 525|Caenorhabditis elegans Hypothetical
protein C38C10.4 protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 580 ELLQFRLVF-FEEICDQSREVRHEVIKPSKYSLSK 479
EL F+L+F + E CD +R + + +K K+S ++
Sbjct: 78 ELNMFKLIFNYPEACDSTRRIVQQALKMEKFSKAR 112
>Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical
protein R53.1b protein.
Length = 510
Score = 29.1 bits (62), Expect = 3.8
Identities = 30/93 (32%), Positives = 42/93 (45%)
Frame = +3
Query: 273 DDKTLKELSHAFNEIVQFFAKIFDTIYKGTEPIVESIINTYVETVKKIAELYEXQLEPQV 452
DDKT L+HAF + +QF +I V + TY T KK AE LE V
Sbjct: 78 DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 127
Query: 453 RQLYETLAALLKEYLDGLMTSWRTSRL*SQISS 551
R E L + K + L+ W T ++ +S+
Sbjct: 128 RLATEKLCTIPK--MSQLL--WGTQKINGSLST 156
>Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical
protein R53.1a protein.
Length = 519
Score = 29.1 bits (62), Expect = 3.8
Identities = 30/93 (32%), Positives = 42/93 (45%)
Frame = +3
Query: 273 DDKTLKELSHAFNEIVQFFAKIFDTIYKGTEPIVESIINTYVETVKKIAELYEXQLEPQV 452
DDKT L+HAF + +QF +I V + TY T KK AE LE V
Sbjct: 87 DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 136
Query: 453 RQLYETLAALLKEYLDGLMTSWRTSRL*SQISS 551
R E L + K + L+ W T ++ +S+
Sbjct: 137 RLATEKLCTIPK--MSQLL--WGTQKINGSLST 165
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAPWAMFFLSPD 6
KK L+ P S + RLSC + WA+ +++PD
Sbjct: 287 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 320
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAPWAMFFLSPD 6
KK L+ P S + RLSC + WA+ +++PD
Sbjct: 287 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 320
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAPWAMFFLSPD 6
KK L+ P S + RLSC + WA+ +++PD
Sbjct: 270 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 303
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAPWAMFFLSPD 6
KK L+ P S + RLSC + WA+ +++PD
Sbjct: 270 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 303
>Z50874-1|CAA90763.1| 377|Caenorhabditis elegans Hypothetical
protein R10E4.1 protein.
Length = 377
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 255 FYQEVTDDKTLKELSHAFNEIVQFFAKIFDTIYKGTEPIVESIINTYVETVKKIAELYEX 434
FY E+ +DK + E+ F EI+ F IY +P+ + ++ ++ +A+ Y+
Sbjct: 179 FYGELGEDKEIYEMKEKFREIITFLR----CIYPHRQPVTKKSLDYLLQ----LADRYQC 230
Query: 435 Q 437
Q
Sbjct: 231 Q 231
>Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical
protein R03G8.3 protein.
Length = 654
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 591 ITFVNSCSSGLCFSKKSVIRAAKCATRSSSHLN 493
+TF+N+ S G+ K +I A+C TR S N
Sbjct: 104 LTFLNNGSWGVVNKKTKLICRARCHTRKSERYN 136
>U64840-6|AAB04964.1| 574|Caenorhabditis elegans Hypothetical
protein ZC317.7 protein.
Length = 574
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 139 AERIKEKSEKAGQEISTISQKTAPYFKKIDEDFRREWSNFTRKSLMIRL 285
A++ K K+EK ++ T K +KI R++SNF++ +IRL
Sbjct: 278 AQKAKLKAEKLAEKTKTTVVKKKK--EKISGQSNRKFSNFSKDMFVIRL 324
>U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical
protein C14C11.2 protein.
Length = 574
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 139 AERIKEKSEKAGQEISTISQKTAPYFKKIDEDFRREWSNFTRKSLMIRL 285
A++ K K+EK ++ T K +KI R++SNF++ +IRL
Sbjct: 278 AQKAKLKAEKLAEKAKTAVVKKKK--EKISGQSNRKFSNFSKDMFVIRL 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,692
Number of Sequences: 27780
Number of extensions: 340637
Number of successful extensions: 1281
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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