Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0746
         (534 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:...   100   4e-20
UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23...    74   2e-12
UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome s...    65   1e-09
UniRef50_Q3W3K7 Cluster: EAL domain:GAF; n=1; Frankia sp. EAN1pe...    32   7.2  

>UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:
           LIX1-like protein - Homo sapiens (Human)
          Length = 337

 Score = 99.5 bits (237), Expect = 4e-20
 Identities = 48/67 (71%), Positives = 52/67 (77%)
 Frame = +3

Query: 264 PXVCYVTLPGGXCFXSFQNCPTKAEARXSAAKIALMNSVFNXXESRRISDHFIEKAVAXX 443
           P VCYVTLPGG CF SFQ CPTKAEAR SAAKIALMNSVFN   SRRI+D FIEK+V+  
Sbjct: 135 PYVCYVTLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEA 194

Query: 444 RAFXXGD 464
            A   G+
Sbjct: 195 LASFNGN 201



 Score = 39.9 bits (89), Expect = 0.036
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +1

Query: 157 NVVEALQEFWQVKXXXXXXXXXXXLVIYESVPALXRP 267
           NVVEALQEFWQ+K           LV+YE VP+   P
Sbjct: 99  NVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPP 135


>UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23;
           Coelomata|Rep: Protein limb expression 1 homolog - Homo
           sapiens (Human)
          Length = 282

 Score = 73.7 bits (173), Expect = 2e-12
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = +3

Query: 264 PXVCYVTLPGGXCFXSFQNCPTKAEARXSAAKIALMNSVFNXXESRRISDHFIEKAV 434
           P V YVTLPGG CF +FQ C ++AEAR  AAK+AL+NS+FN   SRRI+  FI ++V
Sbjct: 65  PFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESV 121



 Score = 36.3 bits (80), Expect = 0.44
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 151 DXNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPALXRP 267
           D NVV  LQEFW+ K           +V+YES+PA   P
Sbjct: 27  DLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPP 65


>UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 12 SCAF14993, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 666

 Score = 64.9 bits (151), Expect = 1e-09
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +3

Query: 264 PXVCYVTLPGGXCFXSFQNCPTKAEARXSAAKIALMNSVFNXXESRRISDHFIEKAV 434
           P VCYVTLPGG CF +++ C  +AEAR  AA++ALMNS+ N    R I+  FI +++
Sbjct: 52  PYVCYVTLPGGSCFGNYKVCLFQAEARRDAARVALMNSLVNELPCRCINAQFISQSL 108


>UniRef50_Q3W3K7 Cluster: EAL domain:GAF; n=1; Frankia sp.
           EAN1pec|Rep: EAL domain:GAF - Frankia sp. EAN1pec
          Length = 447

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = -1

Query: 339 LPL*LGSFENCXSXXHRGAXRSXXRAXERRXRLVDDEGAA 220
           L L  G+  NC S  HRG  R   R   R  RL+DD G A
Sbjct: 151 LALIAGALSNCVSD-HRGDWRERDRVWRRISRLIDDGGPA 189


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,544,195
Number of Sequences: 1657284
Number of extensions: 3583090
Number of successful extensions: 5084
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5084
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)