Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0746
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035727-1|AAH35727.1|  337|Homo sapiens Lix1 homolog (mouse)-li...   100   6e-21
BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse) pr...    74   4e-13
AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens ...    74   4e-13

>BC035727-1|AAH35727.1|  337|Homo sapiens Lix1 homolog (mouse)-like
           protein.
          Length = 337

 Score = 99.5 bits (237), Expect = 6e-21
 Identities = 48/67 (71%), Positives = 52/67 (77%)
 Frame = +3

Query: 264 PXVCYVTLPGGXCFXSFQNCPTKAEARXSAAKIALMNSVFNXXESRRISDHFIEKAVAXX 443
           P VCYVTLPGG CF SFQ CPTKAEAR SAAKIALMNSVFN   SRRI+D FIEK+V+  
Sbjct: 135 PYVCYVTLPGGSCFGSFQFCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEA 194

Query: 444 RAFXXGD 464
            A   G+
Sbjct: 195 LASFNGN 201



 Score = 39.9 bits (89), Expect = 0.006
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +1

Query: 157 NVVEALQEFWQVKXXXXXXXXXXXLVIYESVPALXRP 267
           NVVEALQEFWQ+K           LV+YE VP+   P
Sbjct: 99  NVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPP 135


>BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse)
           protein.
          Length = 282

 Score = 73.7 bits (173), Expect = 4e-13
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = +3

Query: 264 PXVCYVTLPGGXCFXSFQNCPTKAEARXSAAKIALMNSVFNXXESRRISDHFIEKAV 434
           P V YVTLPGG CF +FQ C ++AEAR  AAK+AL+NS+FN   SRRI+  FI ++V
Sbjct: 65  PFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESV 121



 Score = 36.3 bits (80), Expect = 0.068
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 151 DXNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPALXRP 267
           D NVV  LQEFW+ K           +V+YES+PA   P
Sbjct: 27  DLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPP 65


>AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25534 fis, clone CBR08513. ).
          Length = 282

 Score = 73.7 bits (173), Expect = 4e-13
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = +3

Query: 264 PXVCYVTLPGGXCFXSFQNCPTKAEARXSAAKIALMNSVFNXXESRRISDHFIEKAV 434
           P V YVTLPGG CF +FQ C ++AEAR  AAK+AL+NS+FN   SRRI+  FI ++V
Sbjct: 65  PFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESV 121



 Score = 36.3 bits (80), Expect = 0.068
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 151 DXNVVEALQEFWQVKXXXXXXXXXXXLVIYESVPALXRP 267
           D NVV  LQEFW+ K           +V+YES+PA   P
Sbjct: 27  DLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPP 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,370,700
Number of Sequences: 237096
Number of extensions: 566380
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)