Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0744
         (302 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   2.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   2.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   2.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   2.1  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 114 FLSSCXRPHLVNVLASEPTQ 55
           +LS+  R HL +++   PTQ
Sbjct: 64  YLSAPEREHLASIIRLTPTQ 83


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 125 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 39
           R  ++SA   +      W QN+R  Q KR
Sbjct: 283 RIEIASALQLNETQVKIWFQNRRMKQKKR 311


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 125 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 39
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 125 RSHVSSAHARDRIS*TFWLQNQRRGQPKR 39
           R  ++SA   +      W QN+R  Q KR
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKR 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,006
Number of Sequences: 336
Number of extensions: 711
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)