Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0744
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    27   3.4  
Z81076-5|CAB03055.1|  389|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    25   7.9  

>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 20  MQKLIIFALVVLCVGSEAKTFTRCGLXH 103
           M  L  F L + C+G  +  F +CG+ H
Sbjct: 309 MLSLSFFILTMCCIGVNSGGFYKCGVLH 336


>Z81076-5|CAB03055.1|  389|Caenorhabditis elegans Hypothetical
           protein F35C5.5a protein.
          Length = 389

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 230 FQINDRYWSAKAPVQAKTAT 289
           FQ+ND  W+   P Q+ T T
Sbjct: 329 FQLNDSLWNPGFPTQSSTTT 348


>Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical
           protein T27A8.1 protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 223 RIVPDQRPVLVSKGASPGKD 282
           RI+P  RPVL+   + P KD
Sbjct: 435 RIIPRSRPVLIPTKSVPNKD 454


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 2   AKDTIEMQKLIIFALVV 52
           +K TI+MQ L+IFAL++
Sbjct: 224 SKKTIQMQHLLIFALIL 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,131,470
Number of Sequences: 27780
Number of extensions: 64361
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)