Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0744
         (302 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23530.1 68417.m03391 expressed protein                             26   4.2  
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    26   5.6  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    26   5.6  
At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ...    25   7.4  
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    25   7.4  
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d...    25   9.7  
At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr...    25   9.7  

>At4g23530.1 68417.m03391 expressed protein
          Length = 396

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 191 TNTNRNGSXDYGLFQINDRYWSAKAPVQAKTATLSAP 301
           T +N  G   YG  Q+  + WSA   +QA  A L  P
Sbjct: 203 TRSNVTGGGLYG--QVVSKNWSASKQIQAMVANLVLP 237


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 93  PHLVNVLASEPTQRTTKAKIINFC 22
           PH +   +++P   +TKAK+  FC
Sbjct: 211 PHFLACRSAQPLLESTKAKLSQFC 234


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 90  HLVNVLASEPTQRTTKAKIINFCISIVSF 4
           HLVNV   E + R ++  I   C S VSF
Sbjct: 32  HLVNVHIFEESPRDSRDAICKLCKSTVSF 60


>At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to
           SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1)
           (NR1){Arabidopsis thaliana}
          Length = 917

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 297 ALNVAVFAWTGAFADQYRSLIWN 229
           A +VAV AW  +F  Q   LIWN
Sbjct: 452 AKDVAVRAWDESFNTQPDKLIWN 474


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 97  ETASRERFGFRTNAEDNQSEN---N*LLHFDRIFR 2
           ETAS  R+GFR +  ++  ++   N + H DR+F+
Sbjct: 675 ETASAVRYGFREHLLESSGKSHSENHISHPDRVFQ 709


>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q9P6R9 Cell
           cycle control protein cwf22 {Schizosaccharomyces pombe};
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 900

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 145 VPHEIXFEAMFPQLMXETASRERFGFRTNAEDNQSENN 32
           V +E  +EA+  +L+ +  S +  G   ++EDN  E +
Sbjct: 590 VENEKKYEALKKELLGDEESEDEDGSDASSEDNDEEED 627


>At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 771

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 8   DTIEMQKLIIFALVVLCVGSEA 73
           DT+E Q+  +  LV+LC GSE+
Sbjct: 648 DTVE-QEQAVSCLVILCTGSES 668


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,810,410
Number of Sequences: 28952
Number of extensions: 60329
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)