Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0742
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   3.0  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.3  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   9.3  

>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 354 ADIDPEMHDILDEDERSDWLIE 419
           A IDPE   +   DER DWL E
Sbjct: 54  ATIDPEEAKVAVPDERFDWLCE 75


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 112 HYRCPF--VVAIKMCFYEVCPNARNVWCARIRESY 14
           HY  P+  +  I+M +YE+       WC ++R  +
Sbjct: 65  HYEVPYKWIFIIEMLYYELYLTLYVCWCYKLRSDF 99


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 263 KKLLEKNSHNTTVTGCPFAERNCTVRNVPNYLAN 162
           ++ + +NS+N +  G      N TV N+P+Y  N
Sbjct: 382 RRNVSRNSNNNSPEGYDNNRTNPTVNNLPSYPTN 415


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 KDVWEADIDPEMHDILDEDERSDWLIERDSKS 434
           K   +AD +PE  + LDE + +D     DSKS
Sbjct: 309 KTTEDADEEPETEENLDEFKPADGADNEDSKS 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,065
Number of Sequences: 5004
Number of extensions: 64356
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)