Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0742
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973... 32 0.45
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 32 0.59
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 31 1.4
07_03_0310 - 16574364-16574538,16574648-16574865,16574955-165750... 30 1.8
04_04_0683 - 27234137-27234486,27234645-27234756,27234889-272349... 30 1.8
11_01_0385 + 2915532-2916482 29 3.2
12_01_0107 - 843820-846335,846400-846511 29 4.2
09_04_0007 - 13641012-13641431,13642220-13642312,13642429-136425... 29 4.2
03_03_0115 + 14568904-14569152,14569561-14569797,14569913-145701... 29 4.2
01_01_0222 - 1896077-1896316 29 5.5
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 28 7.3
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695... 28 7.3
03_03_0047 - 14046750-14046788,14046896-14047045,14047143-140472... 28 7.3
04_01_0530 - 6928528-6929500,6929514-6930964 28 9.6
>06_03_0593 +
22596372-22596384,22596856-22597037,22597119-22597344,
22597429-22597855,22598075-22598429,22598511-22599089
Length = 593
Score = 32.3 bits (70), Expect = 0.45
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 336 LKDVWEADIDPEMHDILDEDERSDWLIERDSKSGVVLHDRLMTDAALG 479
L+ W +D D E D LDED R I RD +G + ++R M +A G
Sbjct: 244 LESDWNSDSDDEESDDLDEDNRGMAQI-RDDLAGAMWNNRGMAEAGGG 290
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 31.9 bits (69), Expect = 0.59
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 336 LKDVWEADIDPEMHDILDEDERSDWLIERDSKSGVVLHDRLMTDAALG 479
L+ W +D D E D LDED R I RD +G + ++R M +A G
Sbjct: 339 LESDWNSDSDDEEPDDLDEDNRGMAQI-RDDLAGAMWNNRGMAEAGGG 385
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/97 (24%), Positives = 40/97 (41%)
Frame = +3
Query: 351 EADIDPEMHDILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEHSIVYTPMS 530
+ +++ E +D D DE DW + D++ G + M + ALGA A + S
Sbjct: 80 DGEMEEEYYD--DGDEEGDWE-DDDAEEGEEMDVEAMEEEALGAVADLSERLSRELRIDD 136
Query: 531 NQRHPRRIIPKLMIWKTNATQRCRPAPGVVGDGXVNR 641
+ R RRII + P ++G V +
Sbjct: 137 DVRDKRRIIRDKTSASKHIPDNLLPRVAIIGRPNVGK 173
>07_03_0310 -
16574364-16574538,16574648-16574865,16574955-16575019,
16575101-16575191,16575407-16575613,16576805-16577041
Length = 330
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 647 GAAIHXTVADYSRRWPASLGSIRLPYHQLWYDAAR-VALIRHRSVDYRVF 501
G+A H + + +WP +RL W+ R VAL+R Y VF
Sbjct: 192 GSAFHSKIHRWLEKWPKKAAFVRLAGEGDWFHQFRAVALLRISPFPYLVF 241
>04_04_0683 -
27234137-27234486,27234645-27234756,27234889-27234961,
27235071-27235491,27236148-27236403
Length = 403
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 287 LRPPTRKHK--KLLEKNSHNTTVTGCPFAERNCTVRNVPNYLANKLKEHCALS 135
L+PPT K K K L+KN + T+ PF+++N P+ L+N+ ALS
Sbjct: 17 LKPPTLKLKEQKQLKKNPSHITMENGPFSDQNFRKMGDPD-LSNRSGSGSALS 68
>11_01_0385 + 2915532-2916482
Length = 316
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 250 SRSFLCFRVGGRSATPAPTWRFISTSPMI 336
SRS L GG++A PAP W F + P+I
Sbjct: 38 SRSLLV--TGGQAAAPAPVWSFGALPPLI 64
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 333 DLKDVWEADIDPEMHDILDEDERSDWLIERDSKSGVVL 446
D K+ D+D + + ILDED + + ++ D K ++L
Sbjct: 371 DGKESHILDVDGKQNHILDEDGKENHILNEDDKENLIL 408
>09_04_0007 -
13641012-13641431,13642220-13642312,13642429-13642521,
13642607-13642671,13643495-13643565,13643644-13643682,
13644709-13645121
Length = 397
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 665 APTSLPGAAIHXTVADYSRRWPASLGSIRL 576
APT+ P AA RRWPA+ +R+
Sbjct: 3 APTASPAAAAGRAAIPSLRRWPAAAAGVRI 32
>03_03_0115 +
14568904-14569152,14569561-14569797,14569913-14570130,
14570586-14570749,14571510-14571733
Length = 363
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 692 LVGDSVSDLAPTSLPGAAIHXTVADYSRRWPASLGSIRLPYHQLWYDAAR-VALIRHRSV 516
+VG ++ + P + G+ + + +RWP + I+L W+ R VAL R
Sbjct: 140 MVGTTIGMVVPYWI-GSLFRERLHAWLKRWPQQIALIKLAGEGNWFQQFRVVALFRISPF 198
Query: 515 DYRVF 501
Y +F
Sbjct: 199 PYTIF 203
>01_01_0222 - 1896077-1896316
Length = 79
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 312 PPCRGRCSTTASDAKAQETPREK 244
PPCRG STTA +E REK
Sbjct: 37 PPCRGATSTTAVLKDGREVRREK 59
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 476 RRCCTHQNRTLYSLHSDVESAPPSPHHTKV 565
RRC + N S HS ++++ PSP H K+
Sbjct: 276 RRCSSVANSRCCSAHSRLQASMPSPIHLKL 305
>05_06_0032 -
25067996-25068156,25068746-25068815,25069385-25069532,
25069611-25069726,25069799-25069877,25069960-25070030,
25070139-25070348,25070445-25070453,25070824-25070968,
25071297-25071332,25071428-25071494,25071591-25071624
Length = 381
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 55 SGKLHKNTFLLQQQMGIDSVND*T*TRDNAQCSLSL 162
SG LH N +L+Q+ G VND + + N Q L
Sbjct: 191 SGNLHDNMIILKQESGYADVNDNSFLKVNLQMEQGL 226
>03_03_0047 -
14046750-14046788,14046896-14047045,14047143-14047277,
14047615-14047673,14047755-14047871,14048035-14048073,
14048245-14048425,14049381-14049464,14049565-14049633,
14050175-14050315,14050435-14050527,14050767-14050895,
14051187-14051501
Length = 516
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 193 VQFRSAKGQPVTVVLCEFFSRSF-LC-FRVGGRSATPAPTWR 312
++ R +KG+ TVV EF+S S LC R GG +A+ A WR
Sbjct: 433 LRMRLSKGK--TVVAKEFYSSSMQLCGVRGGGEAASQAMFWR 472
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -2
Query: 206 ERNCTVRNVPNYLANKLKEHCAL-SRVYVQSF-TLSMPICCCNKNVFL*SLPEREECL 39
+ N +R Y+A + ++ + S+V V SF + + + CC KNV L L E + L
Sbjct: 672 QTNTGIRGTRGYVAPEWFKNIGITSKVDVYSFGVILLELVCCRKNVELEVLDEEQTIL 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,066,864
Number of Sequences: 37544
Number of extensions: 487648
Number of successful extensions: 1402
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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