Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0742
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7686| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     28   9.8  
SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)               28   9.8  

>SB_7686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 321 DISNDLKDVWEADIDPEMHDILDEDERSDWLIERDSKSGV 440
           D+ +D KDV + D D +  D+ D+D+  D  ++ D+ SGV
Sbjct: 37  DVDDDDKDVGDDDDDDDDEDV-DDDDDDDEDVDDDAGSGV 75


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = -2

Query: 356 RLPDVLQIIGDVEINLHVGAG----VALRPPTRKHKKLLEKNSHNTTVTGCPFAERNCTV 189
           R P +++ + DV    +V  G    VA+   T      +E+N   T++    F ERNC V
Sbjct: 624 RFPQLVESLNDVS---YVACGDTFSVAVSSDTTAALCFVERNCEVTSIAARYFVERNCDV 680

Query: 188 RNVP--NYLANKLKEHCALSRVYVQSF 114
            ++    ++      +C ++ +  + F
Sbjct: 681 TSIAARYFVERNCDRNCEVTSIAARYF 707


>SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 327 RCRNKPPCRGRCSTTASDAKAQETPREKLAQHNCH 223
           +C  K  C  + +T    A  Q   ++ + QH CH
Sbjct: 11  KCHAKTTCNNKNATQRQRATTQMPRKDNVKQHKCH 45


>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
          Length = 774

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = -1

Query: 321 RNKPPCRGRCSTTASDAKAQETPREKLAQHNCHRLSFRRAELYGT*CSKLFSKQTQ 154
           R K  C   C    S   +  +P      HNCH     +  + G+ C K F++  +
Sbjct: 648 RGKRKCLCACPNCVSRINSNPSPTHP-KYHNCHYPGCGKQTILGSTCGKSFTRSDE 702


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,856,277
Number of Sequences: 59808
Number of extensions: 538444
Number of successful extensions: 1463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)