Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0742
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    30   1.5  
At3g11590.1 68416.m01416 expressed protein                             30   2.0  
At4g10470.1 68417.m01719 expressed protein                             29   4.6  
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa...    28   6.1  
At2g02370.1 68415.m00175 expressed protein                             28   6.1  
At5g01730.1 68418.m00091 expressed protein                             28   8.0  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    28   8.0  

>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -2

Query: 245 NSHNTTVTGCPFAERNCTVRN--VPNYLA--NKLKEHCALSRVYVQSF 114
           N  N+    C F  RNCT+ N     Y+   N L  H ++SR+Y Q +
Sbjct: 201 NDGNSPPGRCSFPGRNCTLGNSSTETYIVGHNLLLAHASVSRLYKQKY 248


>At3g11590.1 68416.m01416 expressed protein
          Length = 622

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 247 FSRSFLCFRVGGRSATPAPTWRFISTSP 330
           F R+ +  + GG S TP PTWR +  SP
Sbjct: 39  FKRAIVVGKRGG-STTPVPTWRLMGRSP 65


>At4g10470.1 68417.m01719 expressed protein
          Length = 388

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 200 NCTVRNVPNYLANKLKEH 147
           NCTV+N+ +Y+ N+++EH
Sbjct: 305 NCTVQNLNSYINNRVQEH 322


>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 348

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 112 HYRCPFVVAIKMCFYEVCPNARNVWCARIRE 20
           HYRC   +    C   + P  R +W  RI+E
Sbjct: 146 HYRCKTTLKFGGCINLLTPKIREMWQQRIKE 176


>At2g02370.1 68415.m00175 expressed protein
          Length = 320

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 692 LVGDSVSDLAPTSLPGAAIHXTVADYSRRWPASLGSIRLPYHQLWYDAAR-VALIRHRSV 516
           +VG ++  + P  L G      +  + +RWP     +RL     W+   R VA+ R    
Sbjct: 140 MVGTTIGMVLPY-LIGLMFRDRLHQWLKRWPRQAAVLRLAAEGSWFHQFRVVAIFRVSPF 198

Query: 515 DYRVF 501
            Y +F
Sbjct: 199 PYTIF 203


>At5g01730.1 68418.m00091 expressed protein
          Length = 1192

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 333 DLKDVWEADIDPEMH-DILDEDERSDWLIERDSKSGVVLHDRLMTDAALGAAAPIKTEH 506
           DL + W+ +   E++ D +  + R +  +   ++    LH++LMT AA G    ++ +H
Sbjct: 49  DLSEEWDTEGSVELNFDAIYSESRENLNLGFAAEVFHCLHEQLMTTAARGHGLAMRLQH 107


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
 Frame = +3

Query: 387 DEDERSDWLIERD----SKSGVVLHDRLMTDAALGAAAPIKTEHSI----VYTPMSNQRH 542
           +EDER   L  R     S + + LH++  TD A  +    K EH++    VY   SN + 
Sbjct: 168 EEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQ- 226

Query: 543 PRRIIPKLM 569
            RR +PK +
Sbjct: 227 DRRSLPKAL 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,522
Number of Sequences: 28952
Number of extensions: 352659
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)