Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0741
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    31   0.19 
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    31   0.25 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    27   3.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   3.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.4  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    26   7.2  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   7.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   9.5  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +2

Query: 26  TGD--NLKPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSKTFED 199
           TGD    K   LI GG GFIG N +DY +          +DK      +     SK    
Sbjct: 2   TGDYKEYKGYALITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQ 61

Query: 200 PRVEYKSANL 229
           P   +   +L
Sbjct: 62  PNFRFLEMDL 71


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +2

Query: 41  KPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPT----HS--KTFEDP 202
           K +V+IL   GF+ R L DY+    +   L+ + K+  +   L+ +    HS  +  +DP
Sbjct: 201 KLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEILKDP 260

Query: 203 RVEYKSAN 226
            VE K A+
Sbjct: 261 AVESKLAD 268


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 128 LRVVDKTPPQLAFLNPTHSKTFED 199
           L +  KTPP L FL+ +    FED
Sbjct: 183 LEICQKTPPNLDFLDRSGDSVFED 206


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 41   KPRVLILGGCGFIGRNL-VDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSK 187
            K R+L+  GC F+G  L  D+ I N LV   +VVD     L FL+    K
Sbjct: 980  KLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDTV--DLFFLSSRQRK 1027


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 334 VYAEGIVTLSLNVAKHCARMKVPRLVEISS-GQMCSNDKPQKEDCSI 471
           + A G++T   +  +   ++  PR ++ S  G +C++D P+ E C +
Sbjct: 475 ISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGL 521


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 455 FWGLSLLHICPLEISTSLGTFILAQ 381
           FWGL    I  +++ST LGT +L +
Sbjct: 163 FWGLERKPIKGIQLSTKLGTKLLVK 187


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 65  GCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAF 166
           GC  + + LVD    ++ V GL+ +  TP +L F
Sbjct: 406 GCPSLEKPLVDKAAIDEAVEGLKKLTNTPVKLRF 439


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 603 GVSNFFCLRFRTQ*RAL*WCSSGPPCFSALVPFALHPT 490
           G+ + FC ++  + R+L    SG P FS +V   LH T
Sbjct: 300 GLCSRFCKQWSDKARSLMQALSGLPWFSFVVQHCLHIT 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,711
Number of Sequences: 5004
Number of extensions: 68426
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)