BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0741 (797 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52884| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.022 SB_59509| Best HMM Match : Protamine_P1 (HMM E-Value=7.6) 32 0.47 SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 29 3.3 SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 29 4.4 SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) 29 5.8 >SB_52884| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 192 Score = 36.7 bits (81), Expect = 0.022 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +1 Query: 616 GGIYKHLGETMKLLWDWRSENEHGTCXANVCRAIWTL 726 GG+YK L E MKLLW + + +VCRA+W L Sbjct: 35 GGVYKQLNEKMKLLWT-KELKMNTVHVEDVCRALWHL 70 >SB_59509| Best HMM Match : Protamine_P1 (HMM E-Value=7.6) Length = 59 Score = 32.3 bits (70), Expect = 0.47 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 276 AMGAGSELCERNSRRSDRGGLCGRNRHP 359 A+ ++ C RN +RS G LCGR R P Sbjct: 4 ALSGSAKRCRRNGKRSILGLLCGRQRRP 31 >SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) Length = 816 Score = 29.5 bits (63), Expect = 3.3 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = -2 Query: 769 NQVIXSAXWPEDWSRESRWHDRRSRXMYRV 680 N I S WP DW R ++ + ++ YR+ Sbjct: 455 NHCIDSCEWPNDWKRSNKKDETTAKTNYRL 484 >SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) Length = 1086 Score = 29.1 bits (62), Expect = 4.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 84 RPMKPHPPSIKTRGFKLSPVVSDISPV 4 RP KP P K +GFKL P V+ +P+ Sbjct: 312 RPPKPAPQGRKGKGFKLGPKVALSTPM 338 >SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) Length = 672 Score = 28.7 bits (61), Expect = 5.8 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +2 Query: 8 GEMSDTTGDNLKPRVLILGGCGFIGRNLVDYLI 106 GE + +T +N PRVL+ G GFI ++V L+ Sbjct: 5 GETNASTAENT-PRVLVTGASGFIACHVVKQLL 36 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,160,901 Number of Sequences: 59808 Number of extensions: 560287 Number of successful extensions: 1278 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1277 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2203769656 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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