Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0741
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52884| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_59509| Best HMM Match : Protamine_P1 (HMM E-Value=7.6)              32   0.47 
SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)           29   3.3  
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             29   4.4  
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)             29   5.8  

>SB_52884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 616 GGIYKHLGETMKLLWDWRSENEHGTCXANVCRAIWTL 726
           GG+YK L E MKLLW  +    +     +VCRA+W L
Sbjct: 35  GGVYKQLNEKMKLLWT-KELKMNTVHVEDVCRALWHL 70


>SB_59509| Best HMM Match : Protamine_P1 (HMM E-Value=7.6)
          Length = 59

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 276 AMGAGSELCERNSRRSDRGGLCGRNRHP 359
           A+   ++ C RN +RS  G LCGR R P
Sbjct: 4   ALSGSAKRCRRNGKRSILGLLCGRQRRP 31


>SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
          Length = 816

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 769 NQVIXSAXWPEDWSRESRWHDRRSRXMYRV 680
           N  I S  WP DW R ++  +  ++  YR+
Sbjct: 455 NHCIDSCEWPNDWKRSNKKDETTAKTNYRL 484


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 84  RPMKPHPPSIKTRGFKLSPVVSDISPV 4
           RP KP P   K +GFKL P V+  +P+
Sbjct: 312 RPPKPAPQGRKGKGFKLGPKVALSTPM 338


>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
          Length = 672

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 8   GEMSDTTGDNLKPRVLILGGCGFIGRNLVDYLI 106
           GE + +T +N  PRVL+ G  GFI  ++V  L+
Sbjct: 5   GETNASTAENT-PRVLVTGASGFIACHVVKQLL 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,160,901
Number of Sequences: 59808
Number of extensions: 560287
Number of successful extensions: 1278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)