Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0741
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47290.2 68414.m05236 3-beta hydroxysteroid dehydrogenase/iso... 37 0.018
At1g47290.1 68414.m05235 3-beta hydroxysteroid dehydrogenase/iso... 37 0.018
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 34 0.095
At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam... 34 0.13
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam... 34 0.13
At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3... 33 0.17
At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase fam... 33 0.17
At1g79620.1 68414.m09283 leucine-rich repeat transmembrane prote... 31 0.67
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 31 0.89
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso... 31 0.89
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 31 0.89
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam... 30 1.5
At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase fam... 30 1.5
At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase fam... 30 1.5
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam... 29 2.7
At5g57390.1 68418.m07170 ovule development protein, putative sim... 29 4.7
At4g24110.1 68417.m03461 expressed protein 29 4.7
At3g22400.1 68416.m02826 lipoxygenase, putative similar to lipox... 28 6.2
At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar ... 28 8.3
At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose... 28 8.3
>At1g47290.2 68414.m05236 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 439
Score = 36.7 bits (81), Expect = 0.018
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +2
Query: 53 LILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSKT------FEDPRVEY 214
++ GG GF R+LV+ L+R + +R+ D P + LNP H +T RV+Y
Sbjct: 13 VVTGGRGFAARHLVEMLVRYQMFH-VRIADLAPAIV--LNP-HEETGILGEAIRSGRVQY 68
Query: 215 KSANLINQTSCASG 256
SA+L N+T G
Sbjct: 69 VSADLRNKTQVVKG 82
>At1g47290.1 68414.m05235 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 382
Score = 36.7 bits (81), Expect = 0.018
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +2
Query: 53 LILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSKT------FEDPRVEY 214
++ GG GF R+LV+ L+R + +R+ D P + LNP H +T RV+Y
Sbjct: 13 VVTGGRGFAARHLVEMLVRYQMFH-VRIADLAPAIV--LNP-HEETGILGEAIRSGRVQY 68
Query: 215 KSANLINQTSCASG 256
SA+L N+T G
Sbjct: 69 VSADLRNKTQVVKG 82
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 34.3 bits (75), Expect = 0.095
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 50 VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP--PQLAFLNPT-HSKTFEDPRVEYKS 220
+LI G GFI ++ + LIR+ + V+DK L LNP+ HS F+ + + S
Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIAS 68
Query: 221 ANLINQTSCASG 256
A+L+N G
Sbjct: 69 ADLVNHLLITEG 80
>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLIRND 115
R+L+ GG GFIG +LVD L++N+
Sbjct: 32 RILVTGGAGFIGSHLVDKLMQNE 54
>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLIRND 115
R+L+ GG GFIG +LVD L++N+
Sbjct: 32 RILVTGGAGFIGSHLVDKLMQNE 54
>At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3)
identical to UDP-glucuronic acid decarboxylase
[Arabidopsis thaliana] GI:14595666; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family; identical to cDNA UDP-glucuronic acid
decarboxylase (UXS3) GI:14595665
Length = 342
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLIRND 115
R+LI GG GFIG +LVD L+ N+
Sbjct: 31 RILISGGAGFIGSHLVDKLMENE 53
>At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 341
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLIRND 115
R+LI GG GFIG +LVD L+ N+
Sbjct: 30 RILISGGAGFIGSHLVDKLMENE 52
>At1g79620.1 68414.m09283 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 971
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 5 TGEMSDTTGDNLKPRVLILGGCGFIG 82
TG ++ GD K +LIL GCGF G
Sbjct: 111 TGSLTSRLGDLQKLNILILAGCGFTG 136
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 31.1 bits (67), Expect = 0.89
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 41 KPR-VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP--PQLAFLNPTHSK-TFEDPRV 208
KP+ +LI G GFI ++ + L+R+ + V+DK L LNP+ S F+ +
Sbjct: 5 KPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKG 64
Query: 209 EYKSANLIN 235
+ SA+L+N
Sbjct: 65 DIASADLVN 73
>At2g43420.1 68415.m05396 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 561
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 29 GDNLKPRVLILGGCGFIGRNLVDYLIR 109
GD+ ++LGG GFIGR+LV L+R
Sbjct: 8 GDSHLKTCVVLGGRGFIGRSLVSRLLR 34
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 31.1 bits (67), Expect = 0.89
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 14 MSDTTGDNLKPR-VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP--PQLAFLNPTHS 184
M DTT KP+ +LI G GFI ++ + LIRN + V+DK L L+P+ S
Sbjct: 1 MDDTT---YKPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFS 57
Query: 185 K-TFEDPRVEYKSANLIN 235
F+ + + S +L+N
Sbjct: 58 SPNFKFVKGDIASDDLVN 75
>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus CA
donor splice site at exon 1 and TA acceptor splice site
at exon 2
Length = 445
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLI-RNDLV 121
RV++ GG GF+G +LVD L+ R D V
Sbjct: 120 RVVVTGGAGFVGSHLVDRLMARGDTV 145
>At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 426
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLI-RNDLV 121
R+++ GG GF+G +LVD LI R D V
Sbjct: 121 RIVVTGGAGFVGSHLVDKLIGRGDEV 146
>At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLI-RNDLV 121
R+++ GG GF+G +LVD LI R D V
Sbjct: 121 RIVVTGGAGFVGSHLVDKLIGRGDEV 146
>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus AT
donor splice site at exon 1 and non-consensus AC
acceptor splice site at exon 2
Length = 443
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 47 RVLILGGCGFIGRNLVDYLI-RNDLV 121
RV++ GG GF+G +LVD L+ R D V
Sbjct: 122 RVVVTGGAGFVGSHLVDRLMARGDNV 147
>At5g57390.1 68418.m07170 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 555
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 544 TPS*GPLLCTESETEEV*HPVSSNGGIYKHLGETMK 651
+PS P L T S T V PV+ +GG + H G +K
Sbjct: 397 SPSDSPSLTTPSLTFNVATPVNDHGGTFYHTGIPIK 432
>At4g24110.1 68417.m03461 expressed protein
Length = 250
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = +1
Query: 253 RLDPGDDAPWGLVVNCASETRGGQTEAVYAEGIVTLSLNVAKHCARMK 396
R D GD W L C E G V AEG V + KH R K
Sbjct: 108 RKDEGDK--WKLECECEMEEEGAAEVVVAAEGHVATATMARKHRRRRK 153
>At3g22400.1 68416.m02826 lipoxygenase, putative similar to
lipoxygenase gi:8649004 [Prunus dulcis], gi:1495802 and
gi:1495804 from [Solanum tuberosum]
Length = 886
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 436 SNDKPQKEDCSIDPWTIEGRMKSKGNKS*KTW 531
+NDK + D I W E R K G+K ++W
Sbjct: 677 NNDKTVQTDTEIQSWWTELRTKGHGDKRHESW 708
>At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar to
type 2 peroxiredoxin [Brassica rapa subsp. pekinensis]
GI:4928472; contains Pfam profile: PF00578 AhpC/TSA
(alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
Length = 234
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 120 TRSFLIK*STKFRPMKPHPPSIKTRGFKLSPVVSDIS 10
TRS S KFR + + S TR F +PV + IS
Sbjct: 38 TRSLAPNLSLKFRNRRTNSASATTRSFATTPVTASIS 74
>At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose
4-epimerase / Galactowaldenase identical to SP|Q42605
[GB:CAA90941] from [Arabidopsis thaliana] (Arch.
Biochem. Biophys. 327 (1), 27-34 (1996))
Length = 351
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 29 GDNLKPRVLILGGCGFIGRNLVDYLIRN 112
G +++ +L+ GG GFIG + V L+++
Sbjct: 2 GSSVEQNILVTGGAGFIGTHTVVQLLKD 29
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,209,804
Number of Sequences: 28952
Number of extensions: 393488
Number of successful extensions: 1084
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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