Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0739
(720 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 146 4e-34
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 146 6e-34
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 138 1e-31
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 131 1e-29
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 7e-28
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 121 2e-26
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 113 3e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 111 2e-23
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 109 7e-23
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 107 4e-22
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 101 1e-20
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 79 1e-13
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 71 3e-11
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 71 4e-11
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 65 2e-09
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 61 3e-08
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 60 7e-08
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 59 1e-07
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 58 2e-07
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 56 1e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 5e-06
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 52 1e-05
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 50 4e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 3e-04
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 47 4e-04
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 47 4e-04
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 47 5e-04
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 46 7e-04
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 45 0.002
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 45 0.002
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 40 0.047
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.062
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 38 0.33
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 36 1.0
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 34 4.1
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 4.1
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
UniRef50_Q9Y8V1 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.4
UniRef50_P38994 Cluster: Probable phosphatidylinositol-4-phospha... 33 9.4
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 146 bits (355), Expect = 4e-34
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
DPTYPAG+MDV+ +EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+
Sbjct: 79 DPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPF 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
LVTHDGRTIRYPDPLI NDS+Q+
Sbjct: 139 LVTHDGRTIRYPDPLIHANDSVQV 162
Score = 143 bits (347), Expect = 3e-33
Identities = 67/76 (88%), Positives = 70/76 (92%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 203 VLKIVKQRLIKVDGKV 250
V KIV QRL+KVDGKV
Sbjct: 61 VTKIVMQRLVKVDGKV 76
Score = 107 bits (258), Expect = 2e-22
Identities = 49/69 (71%), Positives = 55/69 (79%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P + V IA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVH
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVH 209
Query: 648 IKDSTGHTF 674
IKDS GH F
Sbjct: 210 IKDSQGHVF 218
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 146 bits (353), Expect = 6e-34
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D TYPAGFMDV+ I+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+
Sbjct: 79 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
LVTHD RTIRYPDPLIKVND+IQ+
Sbjct: 139 LVTHDARTIRYPDPLIKVNDTIQI 162
Score = 140 bits (340), Expect = 2e-32
Identities = 64/76 (84%), Positives = 69/76 (90%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 203 VLKIVKQRLIKVDGKV 250
V KI QR IK+DGKV
Sbjct: 61 VKKICMQRFIKIDGKV 76
Score = 95.1 bits (226), Expect = 2e-18
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P + + + T KI DFIKF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH
Sbjct: 150 PDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH 209
Query: 648 IKDSTGHTF 674
+KD+ G++F
Sbjct: 210 VKDANGNSF 218
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 138 bits (335), Expect = 1e-31
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = +2
Query: 26 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 205
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 206 LKIVKQRLIKVDGKV 250
KI QR IK+DGKV
Sbjct: 62 KKICMQRFIKIDGKV 76
Score = 94.3 bits (224), Expect = 3e-18
Identities = 37/57 (64%), Positives = 49/57 (85%)
Frame = +3
Query: 504 VSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 674
+ + T KI DFIKF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++F
Sbjct: 194 IDLDTGKITDFIKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSF 250
Score = 74.5 bits (175), Expect(2) = 2e-28
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAK 381
D TYP GFMDV+ I+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 79 DITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 74.1 bits (174), Expect(2) = 2e-28
Identities = 29/43 (67%), Positives = 38/43 (88%)
Frame = +1
Query: 379 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 507
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRI 194
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 131 bits (317), Expect = 1e-29
Identities = 59/84 (70%), Positives = 68/84 (80%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D TYPAGFMDVV I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PY
Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
L T+DGRTIRYPDPLIK ND+I+L
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKL 162
Score = 128 bits (308), Expect = 2e-28
Identities = 58/76 (76%), Positives = 66/76 (86%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 203 VLKIVKQRLIKVDGKV 250
V+ I+ QR I+VDGKV
Sbjct: 61 VISILMQRHIQVDGKV 76
Score = 81.4 bits (192), Expect = 2e-14
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P + + + KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209
Query: 648 IKDSTGHTF 674
I+DSTGH F
Sbjct: 210 IQDSTGHEF 218
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect = 7e-28
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 203 VLKIVKQRLIKVDGK 247
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 100 bits (239), Expect = 4e-20
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = +1
Query: 331 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 507
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQI 134
Score = 91.9 bits (218), Expect = 1e-17
Identities = 37/69 (53%), Positives = 50/69 (72%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P + + + T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH
Sbjct: 122 PDPLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVH 181
Query: 648 IKDSTGHTF 674
+KD+ G++F
Sbjct: 182 VKDANGNSF 190
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 121 bits (292), Expect = 2e-26
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 203 VLKIVKQRLIKVDGKV 250
V IVK R IK+DGK+
Sbjct: 61 VTMIVKNRTIKIDGKI 76
Score = 105 bits (251), Expect = 1e-21
Identities = 45/84 (53%), Positives = 62/84 (73%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D YP GFMDV+ I +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY
Sbjct: 79 DTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPY 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
+VTHDGRTIRYP P ++ ND+I+L
Sbjct: 139 IVTHDGRTIRYPHPELQANDTIKL 162
Score = 84.6 bits (200), Expect = 2e-15
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P Q+ +++ T KI+DF+KF+ GN M+ GG +GRVG IV RE HPGSF+IVH
Sbjct: 150 PHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVH 209
Query: 648 IKDSTGHTF 674
IKD+ G+TF
Sbjct: 210 IKDAKGNTF 218
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 113 bits (273), Expect = 3e-24
Identities = 56/76 (73%), Positives = 63/76 (82%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDE 70
Query: 203 VLKIVKQRLIKVDGKV 250
V KI Q IKVDGK+
Sbjct: 71 VKKICMQWFIKVDGKI 86
Score = 102 bits (244), Expect = 1e-20
Identities = 45/84 (53%), Positives = 59/84 (70%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D P MDV+ I+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+
Sbjct: 89 DNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPH 148
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
LV HD T+R+PD LIKVND+IQ+
Sbjct: 149 LVIHDIHTVRHPDSLIKVNDTIQI 172
Score = 70.1 bits (164), Expect = 5e-11
Identities = 29/57 (50%), Positives = 42/57 (73%)
Frame = +3
Query: 504 VSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 674
+ + T KI +KF++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F
Sbjct: 172 IDLETGKITA-LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSF 227
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 111 bits (266), Expect = 2e-23
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY
Sbjct: 191 DKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPY 250
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQ 504
+VTHD RTIR+P+P IK+ D+++
Sbjct: 251 IVTHDSRTIRFPNPEIKIGDTLK 273
Score = 73.3 bits (172), Expect = 5e-12
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 31/106 (29%)
Frame = +2
Query: 26 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 118
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 119 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKV 250
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKV
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKV 188
Score = 64.9 bits (151), Expect = 2e-09
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = +3
Query: 510 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 674
+ KI +F ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ F
Sbjct: 276 LVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAF 330
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 109 bits (262), Expect = 7e-23
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D +PAG MDV+ I+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY
Sbjct: 79 DKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPY 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
+VTHDGRTIR+P+ LIK NDSI L
Sbjct: 139 IVTHDGRTIRFPNLLIKSNDSIVL 162
Score = 102 bits (245), Expect = 8e-21
Identities = 46/76 (60%), Positives = 59/76 (77%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 203 VLKIVKQRLIKVDGKV 250
L I+K+ I VDGKV
Sbjct: 61 SLNILKKNEIYVDGKV 76
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +3
Query: 504 VSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 674
+ + K++DFIKF G+LC++ G N+GR+G ++ GS IV +KD G +F
Sbjct: 162 LDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSF 218
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 107 bits (256), Expect = 4e-22
Identities = 50/76 (65%), Positives = 58/76 (76%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKE 74
Query: 203 VLKIVKQRLIKVDGKV 250
+ IVK+RL+KVDGKV
Sbjct: 75 AVAIVKRRLVKVDGKV 90
Score = 103 bits (247), Expect = 4e-21
Identities = 42/80 (52%), Positives = 60/80 (75%)
Frame = +1
Query: 265 YPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 444
YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VT
Sbjct: 96 YPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVT 155
Query: 445 HDGRTIRYPDPLIKVNDSIQ 504
HDGRTI Y DP ++V+D+++
Sbjct: 156 HDGRTISYVDPSVRVHDALK 175
Score = 60.9 bits (141), Expect = 3e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +3
Query: 507 SIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 674
+I T ++ IKF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G F
Sbjct: 177 NIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVF 232
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 101 bits (243), Expect = 1e-20
Identities = 46/68 (67%), Positives = 53/68 (77%)
Frame = +2
Query: 38 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 217
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 218 KQRLIKVD 241
+Q L+ VD
Sbjct: 63 RQGLVHVD 70
Score = 95.5 bits (227), Expect = 1e-18
Identities = 45/82 (54%), Positives = 54/82 (65%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP
Sbjct: 76 DGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPV 135
Query: 436 LVTHDGRTIRYPDPLIKVNDSI 501
VTHDG IRYPDP + D+I
Sbjct: 136 AVTHDGHRIRYPDPHTSIGDTI 157
Score = 59.3 bits (137), Expect = 9e-08
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +3
Query: 507 SIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 674
++ K +D IK G ++TGG N GR+G IV E HPG+F+I H+KD++G F
Sbjct: 160 NVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEF 215
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 79.0 bits (186), Expect = 1e-13
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 203 VLKIVKQRLIKVDGKV 250
+ I+ ++ IKV+G+V
Sbjct: 61 LSIILAEKNIKVNGRV 76
Score = 74.5 bits (175), Expect = 2e-12
Identities = 35/82 (42%), Positives = 55/82 (67%)
Frame = +1
Query: 265 YPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 444
+P G DVV IEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+
Sbjct: 82 FPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVS 140
Query: 445 HDGRTIRYPDPLIKVNDSIQLA 510
G +IR+ DP I + +I+++
Sbjct: 141 SCGLSIRFCDPAIDLGYTIKIS 162
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 70.9 bits (166), Expect = 3e-11
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 32 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 208
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 209 KIVKQRLIKVDGKV 250
KI+ + I VDG V
Sbjct: 67 KIITRGEIYVDGVV 80
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
+P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 83 EPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQ 142
Query: 436 LVTHDGRT--IRYPDP 477
+ HDG+ + DP
Sbjct: 143 ITMHDGKNWLVEIEDP 158
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 70.5 bits (165), Expect = 4e-11
Identities = 32/72 (44%), Positives = 45/72 (62%)
Frame = +2
Query: 29 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 208
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 209 KIVKQRLIKVDG 244
KI++ I +DG
Sbjct: 64 KIIQTGKILIDG 75
Score = 41.5 bits (93), Expect = 0.020
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 265 YPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYL 438
+PAG MDV+ I + +E + +++D GR ++ + ++ KLCK+ K V G N+ L
Sbjct: 83 HPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-GNI-QL 138
Query: 439 VTHDGRTIRYPDPLIKVNDS 498
HDGR + ++KV+D+
Sbjct: 139 NLHDGR-----NQIVKVSDA 153
Score = 37.1 bits (82), Expect = 0.44
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 504 VSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFR 677
+SI I + F G L ITGG+++G IV E DIV +++ G F+
Sbjct: 169 ISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFK 226
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 44 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 220
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 221 QRLIKVDGKV 250
+ +KVDG V
Sbjct: 63 RGYVKVDGVV 72
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 75 DYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQ 134
Query: 436 LVTHDGRTI 462
L HDGR +
Sbjct: 135 LHFHDGRNL 143
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +2
Query: 29 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 208
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 209 KIVKQRLIKVDGKV 250
+I+ R+I+VDG+V
Sbjct: 66 RILASRVIEVDGRV 79
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D +P G MDV+ I + +R++ D + I PEEA YKL +++R T
Sbjct: 82 DYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQ 141
Query: 436 LVTHDGRTI 462
HDGR +
Sbjct: 142 FTLHDGRNV 150
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 59.7 bits (138), Expect = 7e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +2
Query: 44 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 223
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 224 RLIKVDGKV 250
+KVDGKV
Sbjct: 63 GYVKVDGKV 71
Score = 43.6 bits (98), Expect = 0.005
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 74 DYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQ 133
Query: 436 LVTHDGRTI 462
L HDGR I
Sbjct: 134 LNLHDGRNI 142
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 58.8 bits (136), Expect = 1e-07
Identities = 33/103 (32%), Positives = 49/103 (47%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 80 DYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQ 137
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQLAXXXXXXXXXXXXXXGTCV 564
+ HDG+ + + V D I L G CV
Sbjct: 138 VNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +2
Query: 32 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 211
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 212 IVKQRLIKVDGKV 250
I+ + VDG+V
Sbjct: 65 IINSGNVLVDGRV 77
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 58.0 bits (134), Expect = 2e-07
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 23 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 199
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 200 EVLKIVKQRLIKVDGKV 250
E K++ + +VDG V
Sbjct: 61 EARKLISEGHFRVDGVV 77
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVP 432
D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++ T
Sbjct: 80 DYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHV 138
Query: 433 YLVTHDGRTI--RYPDPLIKVND 495
L HDGR I R DP V D
Sbjct: 139 QLNLHDGRNILVRVKDPRNPVED 161
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 453 PHHPLPRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG- 629
P +P+ Y++ +++ +I IKF G + +I GGRN+GRVG + S ++ G
Sbjct: 155 PRNPV-EDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGR 213
Query: 630 SFDIVHIKDSTGHTFR 677
+V ++D++G+ F+
Sbjct: 214 KRTLVTLEDASGNLFQ 229
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +2
Query: 44 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 223
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 224 RLIKVDGKV 250
+ VDGKV
Sbjct: 65 GKVLVDGKV 73
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 53.6 bits (123), Expect = 5e-06
Identities = 30/77 (38%), Positives = 40/77 (51%)
Frame = +1
Query: 265 YPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 444
+ GFMDV+ I E +R++Y+ +G + + T E A KL KV+ P N L T
Sbjct: 78 FAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGT 135
Query: 445 HDGRTIRYPDPLIKVND 495
HDGRT D KV D
Sbjct: 136 HDGRTFITDDKSKKVGD 152
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 50 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 229
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 230 IKVDGK 247
+KVDGK
Sbjct: 66 VKVDGK 71
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +2
Query: 44 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 223
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 224 RLIKVDGKV 250
R + VDG++
Sbjct: 65 RQVLVDGRI 73
Score = 39.1 bits (87), Expect = 0.11
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +1
Query: 274 GFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 453
G MDV+ + + + FR I DV G+ I+ + A KLC+V +T + HDG
Sbjct: 82 GLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDG 139
Query: 454 RTIRYPD 474
R I D
Sbjct: 140 RNILVSD 146
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 50.4 bits (115), Expect = 4e-05
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +2
Query: 50 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 229
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 230 IKVDGKV 250
+ ++G +
Sbjct: 64 VLLNGHI 70
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +1
Query: 265 YPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 444
+P MD + N+ +R++ G+ T++ I E K+CKV ++ ++T
Sbjct: 82 FPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIIT 141
Query: 445 HDGRTIRYPDPLIKVNDSI 501
D R ++ IKV DS+
Sbjct: 142 DDLRELKINYAKIKVEDSL 160
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 203 VLKIVKQRLIKVDGK 247
K+VK + V+GK
Sbjct: 61 AQKVVKTGFLYVNGK 75
Score = 34.7 bits (76), Expect = 2.3
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 522 KIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTG 665
+I+ +KFE G+LC+IT G++LG + I + ++H++ G
Sbjct: 168 EIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDG 215
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +2
Query: 41 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 220
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 221 QRLIKVDGK 247
QR + V+G+
Sbjct: 62 QRDVLVNGR 70
Score = 39.1 bits (87), Expect = 0.11
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 274 GFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 414
G D+V I K + +R+ DVKG I E AK +LCK++ T
Sbjct: 80 GVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
Score = 36.3 bits (80), Expect = 0.76
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 522 KIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTF 674
+I+D + GN+ MI GG++ G+VG IV R S ++ DS G F
Sbjct: 167 RIVDHFPYAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERF 219
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 38 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 214
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 215 VKQRLIKVDGK 247
+ + VDG+
Sbjct: 66 LNNGKVLVDGR 76
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVP 432
D +P G DV+ I + NE +R++ D +G+ + +I EEA K K +++V+ +
Sbjct: 80 DYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQ 139
Query: 433 YLVTHDGRT 459
Y +T DGRT
Sbjct: 140 YTLT-DGRT 147
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 44 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 223
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 224 RLIKVDG 244
+ VDG
Sbjct: 63 GKVLVDG 69
Score = 42.3 bits (95), Expect = 0.012
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D +P G DV+ + NE +R++ D KGR ++++ E KLC++ T
Sbjct: 74 DLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQ 132
Query: 436 LVTHDGRTI 462
L +DG I
Sbjct: 133 LNLNDGTNI 141
Score = 34.7 bits (76), Expect = 2.3
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 504 VSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDST 662
+SI ++ +KFE GNL M+ GG++ G G I+ RE + V I T
Sbjct: 155 LSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET 208
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVP 432
D +P GFMDV+ I+ + ++YD KG+ I + P KL K VK+ G +
Sbjct: 76 DRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI- 134
Query: 433 YLVTHDGRTI 462
L HDG+TI
Sbjct: 135 QLGFHDGKTI 144
Score = 37.1 bits (82), Expect = 0.44
Identities = 16/67 (23%), Positives = 35/67 (52%)
Frame = +2
Query: 50 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 229
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 230 IKVDGKV 250
+KVDG++
Sbjct: 67 VKVDGRI 73
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +2
Query: 44 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 223
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 224 RLIKVDGKV 250
+ VDGKV
Sbjct: 63 GKVLVDGKV 71
Score = 43.2 bits (97), Expect = 0.007
Identities = 26/69 (37%), Positives = 32/69 (46%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D YP G MDVV I + R+I D T I+ E+AKYK ++ T V
Sbjct: 74 DYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQ 133
Query: 436 LVTHDGRTI 462
L DGR I
Sbjct: 134 LNLEDGRNI 142
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 44 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 223
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 224 RLIKVDG 244
+ VDG
Sbjct: 64 GNVLVDG 70
Score = 37.9 bits (84), Expect = 0.25
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 504 VSIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 605
+S+ K++ IK+E GNL MI GG + G VG+I
Sbjct: 156 LSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
Score = 34.3 bits (75), Expect = 3.1
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 402
D +P G MD++ I N +R++ D K R ++++ A KLC+++
Sbjct: 75 DLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 40.3 bits (90), Expect = 0.047
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +2
Query: 44 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 223
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 224 RLIKVDGK 247
+ ++GK
Sbjct: 63 DNVLINGK 70
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.062
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 50 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 229
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 230 IKVDGKV 250
+ VDGKV
Sbjct: 66 VMVDGKV 72
Score = 37.5 bits (83), Expect = 0.33
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 504 VSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKD 656
V I +I+D +KF GN ITGG ++G + TI S E + ++VH+ +
Sbjct: 156 VKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNE 207
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 37.5 bits (83), Expect = 0.33
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = -1
Query: 501 DGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 322
+G+ D + V +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 321 TKQFISLLNXDNI 283
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
Score = 36.7 bits (81), Expect = 0.58
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 674 KGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNL--RSCDAN 504
K ++ GVL VHN EG + LA D V + DH Q ++LD + +L R D N
Sbjct: 63 KLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHN 121
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 35.9 bits (79), Expect = 1.0
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +2
Query: 41 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 220
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 221 QRLIKVDG 244
++VDG
Sbjct: 68 SGNVEVDG 75
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 33.9 bits (74), Expect = 4.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2
Query: 155 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAP 24
PG RAT GD + VSV T+R PTS+ W ++ N G P
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEP 135
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 33.9 bits (74), Expect = 4.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 516 LRC*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 367
LR L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 416 LRTPLNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 5.4
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 210 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 40
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 39 LGPRAML 19
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 32.7 bits (71), Expect = 9.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 716 CPCRL*TRCSTLVAKGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLD 537
CP + K + G+L+V ++G + L D ++T V ++ H +P +K D
Sbjct: 115 CPLANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDNIPNIKFD 174
Query: 536 EV 531
EV
Sbjct: 175 EV 176
>UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 731
Score = 32.7 bits (71), Expect = 9.4
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = -2
Query: 386 LYLASSGVIRWIVNLPLTS*IRRNSSLVFSIXTTSINP 273
+++ASSG + W+ + PL + + R + ++FS + ++NP
Sbjct: 672 IHVASSGFLGWVFDKPLENRLLRAAMVLFSALSVTLNP 709
>UniRef50_Q9Y8V1 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 688
Score = 32.7 bits (71), Expect = 9.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 677 AKGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNL 522
AK +++G++D+ G G G HTP+V A + T P +H L
Sbjct: 504 AKSLAKGMIDLLWSPGGGYFRLSPPGPHTPEVPAEAEDTAYPGAYATAIHAL 555
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.4
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 77 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 238
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_P38994 Cluster: Probable phosphatidylinositol-4-phosphate
5-kinase MSS4 (EC 2.7.1.68)
(1-phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5- kinase); n=4; Saccharomycetales|Rep:
Probable phosphatidylinositol-4-phosphate 5-kinase MSS4
(EC 2.7.1.68) (1-phosphatidylinositol-4-phosphate
kinase) (PIP5K) (PtdIns(4)P-5- kinase) - Saccharomyces
cerevisiae (Baker's yeast)
Length = 779
Score = 32.7 bits (71), Expect = 9.4
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +3
Query: 453 PHHPLPRPTYQSQRFHPVSIATTKI 527
P HPLP+P+ +S+++H +S +TT +
Sbjct: 274 PLHPLPQPSQKSKQYHMISKSTTSL 298
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,922,756
Number of Sequences: 1657284
Number of extensions: 17597909
Number of successful extensions: 51344
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 48912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51316
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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