Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0739
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 149 4e-37
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 149 4e-37
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 148 9e-37
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 29 0.67
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.2
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 2.7
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.6
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.7
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.2
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 149 bits (361), Expect = 4e-37
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D T+P GFMDV+ +EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+
Sbjct: 79 DSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPF 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
LVTHDGRTIRYPDPLIKVND+I+L
Sbjct: 139 LVTHDGRTIRYPDPLIKVNDTIKL 162
Score = 128 bits (309), Expect = 8e-31
Identities = 57/76 (75%), Positives = 63/76 (82%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 203 VLKIVKQRLIKVDGKV 250
V I+ QRLIKVDGKV
Sbjct: 61 VKAILMQRLIKVDGKV 76
Score = 73.3 bits (172), Expect = 3e-14
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P + +++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIH 209
Query: 648 IKDSTGHTF 674
+KD+ F
Sbjct: 210 VKDALDREF 218
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 149 bits (361), Expect = 4e-37
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D T+P GFMDV+ +EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+
Sbjct: 79 DSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPF 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
LVTHDGRTIRYPDPLIKVND+I+L
Sbjct: 139 LVTHDGRTIRYPDPLIKVNDTIKL 162
Score = 126 bits (305), Expect = 2e-30
Identities = 56/76 (73%), Positives = 63/76 (82%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 203 VLKIVKQRLIKVDGKV 250
V I+ QRLI+VDGKV
Sbjct: 61 VKAILMQRLIQVDGKV 76
Score = 73.3 bits (172), Expect = 3e-14
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P + +++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIH 209
Query: 648 IKDSTGHTF 674
+KD+ F
Sbjct: 210 VKDALDREF 218
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 148 bits (358), Expect = 9e-37
Identities = 64/84 (76%), Positives = 74/84 (88%)
Frame = +1
Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
D T+P GFMDV+ ++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+
Sbjct: 79 DSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPF 138
Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
LVTHDGRTIRYPDPLIKVND+I+L
Sbjct: 139 LVTHDGRTIRYPDPLIKVNDTIKL 162
Score = 128 bits (309), Expect = 8e-31
Identities = 57/76 (75%), Positives = 63/76 (82%)
Frame = +2
Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 203 VLKIVKQRLIKVDGKV 250
V I+ QRLIKVDGKV
Sbjct: 61 VKAILMQRLIKVDGKV 76
Score = 73.3 bits (172), Expect = 3e-14
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +3
Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
P P + +++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIH 209
Query: 648 IKDSTGHTF 674
+KD+ F
Sbjct: 210 VKDALDREF 218
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 29.1 bits (62), Expect = 0.67
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 604 SCPARDIPAPSTLCTSRTPRDTPFATRVEQRVHNRQ 711
+C ++ P+P++ C TP ++PF VE N Q
Sbjct: 41 ACDKQNTPSPNSECRPLTPLNSPFRRTVEGDTANLQ 76
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 697 HVVQPSWRKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 536
H+ S R+ P ES M + K+ L T P RP L+P + + P S L+
Sbjct: 408 HLGNQSVRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 601 PSCPARDIPAPSTLCTSRTPRDTPFATRVEQRVHNRQ 711
P P R I + +RT PFATR+ Q +RQ
Sbjct: 102 PKTPKRTIQIVTPKSLNRTCNPVPFATRLLQSTPHRQ 138
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 540 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 644
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 450 WPHHPLPRPTYQSQR 494
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 378 SLLRGDTVDCESALNIID*TKQ 313
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,265
Number of Sequences: 5004
Number of extensions: 68798
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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