Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0739
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             149   3e-36
SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3)                    30   2.2  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.0  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.8  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  149 bits (360), Expect = 3e-36
 Identities = 67/76 (88%), Positives = 71/76 (93%)
 Frame = +2

Query: 23  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 203 VLKIVKQRLIKVDGKV 250
           V KIVKQRLIK+DGKV
Sbjct: 485 VKKIVKQRLIKIDGKV 500



 Score =  136 bits (328), Expect = 2e-32
 Identities = 61/82 (74%), Positives = 69/82 (84%)
 Frame = +1

Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
           D TYPAGFMDVV I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY
Sbjct: 503 DTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPY 562

Query: 436 LVTHDGRTIRYPDPLIKVNDSI 501
           +VTHD RTIRYPDP IKVND++
Sbjct: 563 IVTHDARTIRYPDPNIKVNDTV 584



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 36/69 (52%), Positives = 50/69 (72%)
 Frame = +3

Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
           P P  +      + I T K++D+IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH
Sbjct: 574 PDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVH 633

Query: 648 IKDSTGHTF 674
           +KD+TGH F
Sbjct: 634 VKDATGHQF 642


>SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 573

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = -2

Query: 404 RLTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIXTTSINPAG*VGSS*LSHQPL*G 225
           R     +++AS  VI  I ++     IR + SL+ S   +  N  G +    +   P+ G
Sbjct: 320 RFGARQVFIASRHVITTIPSMHRARYIRDSGSLLSSAVESYANYFGIIQLCSIGFGPILG 379

Query: 224 VVSQFSGLRFRSK-HTSDDSSGKSPGASTRATCGD 123
            V   SG R   +  ++DDSS     +++ ATC D
Sbjct: 380 FVIS-SGKRVSKRLDSTDDSSSMIIQSNSSATCKD 413


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 166 EES--SEVCFDRKRSPENCE 219
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 165 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 28
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 243 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 127
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,813,971
Number of Sequences: 59808
Number of extensions: 575102
Number of successful extensions: 1471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)