Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0739
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   118   6e-27
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.3  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.3  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  118 bits (283), Expect = 6e-27
 Identities = 54/74 (72%), Positives = 61/74 (82%)
 Frame = +2

Query: 29  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 208
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 209 KIVKQRLIKVDGKV 250
           KI+ QR+++VDGKV
Sbjct: 62  KILTQRVVRVDGKV 75



 Score =  117 bits (281), Expect = 1e-26
 Identities = 52/79 (65%), Positives = 61/79 (77%)
 Frame = +1

Query: 265 YPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 444
           +P GFMDVV IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T
Sbjct: 81  FPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTT 140

Query: 445 HDGRTIRYPDPLIKVNDSI 501
            DGRTIRYPDP +KVND+I
Sbjct: 141 TDGRTIRYPDPHVKVNDTI 159



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 36/56 (64%), Positives = 44/56 (78%)
 Frame = +3

Query: 507 SIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 674
           +I+T KI D +KFE GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+F
Sbjct: 162 NISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSF 217


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 340 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 471
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 557 LVYDHGRP*LGACGHHRVPRETSRLLRH 640
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 557 LVYDHGRP*LGACGHHRVPRETSRLLRH 640
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 599 HHRVPRETSRLLRHCAHQGLHGTHLSP 679
           HH  P        H  H G HG+H SP
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSHHSP 500



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 599 HHRVPRETSRLLRHCAHQGLHGTHLSP 679
           HH  P        H  H G HG+H SP
Sbjct: 532 HHHAPAHHGHHGEHGTHHGHHGSHHSP 558


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 497  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 333
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,404,706
Number of Sequences: 27780
Number of extensions: 409648
Number of successful extensions: 1162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)