Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0739
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   131   4e-31
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             131   4e-31
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   131   4e-31
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.77 
At3g28110.1 68416.m03508 hypothetical protein                          30   1.3  
At1g29760.1 68414.m03639 expressed protein                             30   1.8  
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   3.1  
At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family prot...    28   5.4  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    27   9.5  
At1g30680.1 68414.m03751 toprim domain-containing protein contai...    27   9.5  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  131 bits (317), Expect = 4e-31
 Identities = 59/84 (70%), Positives = 68/84 (80%)
 Frame = +1

Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
           D TYPAGFMDVV I KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
           L T+DGRTIRYPDPLIK ND+I+L
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKL 162



 Score =  128 bits (308), Expect = 5e-30
 Identities = 58/76 (76%), Positives = 66/76 (86%)
 Frame = +2

Query: 23  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 203 VLKIVKQRLIKVDGKV 250
           V+ I+ QR I+VDGKV
Sbjct: 61  VISILMQRHIQVDGKV 76



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 35/69 (50%), Positives = 48/69 (69%)
 Frame = +3

Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
           P P  +      + +   KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H
Sbjct: 150 PDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209

Query: 648 IKDSTGHTF 674
           I+DSTGH F
Sbjct: 210 IQDSTGHEF 218


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  131 bits (317), Expect = 4e-31
 Identities = 59/84 (70%), Positives = 68/84 (80%)
 Frame = +1

Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
           D TYPAGFMDVV I KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
           L T+DGRTIRYPDPLIK ND+I+L
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKL 162



 Score =  128 bits (308), Expect = 5e-30
 Identities = 58/76 (76%), Positives = 66/76 (86%)
 Frame = +2

Query: 23  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 203 VLKIVKQRLIKVDGKV 250
           V+ I+ QR I+VDGKV
Sbjct: 61  VISILMQRHIQVDGKV 76



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 35/69 (50%), Positives = 48/69 (69%)
 Frame = +3

Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
           P P  +      + +   KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209

Query: 648 IKDSTGHTF 674
           I+DSTGH F
Sbjct: 210 IQDSTGHEF 218


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  131 bits (317), Expect = 4e-31
 Identities = 59/84 (70%), Positives = 68/84 (80%)
 Frame = +1

Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435
           D TYPAGFMDVV I KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PY
Sbjct: 79  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138

Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507
           L T+DGRTIRYPDPLIK ND+I+L
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKL 162



 Score =  128 bits (308), Expect = 5e-30
 Identities = 58/76 (76%), Positives = 66/76 (86%)
 Frame = +2

Query: 23  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 203 VLKIVKQRLIKVDGKV 250
           V+ I+ QR I+VDGKV
Sbjct: 61  VISILMQRHIQVDGKV 76



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 35/69 (50%), Positives = 48/69 (69%)
 Frame = +3

Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647
           P P  +      + +   KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209

Query: 648 IKDSTGHTF 674
           I+DSTGH F
Sbjct: 210 IQDSTGHEF 218


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 147 KHSRNLWGPVDGLGAYTPPSLSNIHAL 67
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At3g28110.1 68416.m03508 hypothetical protein
          Length = 354

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 611 PRETSRLLRHCAHQGLHGTHLSPRGL 688
           PRE +RLL  C   G H  H+ P G+
Sbjct: 224 PREFTRLLASCTSTGTHVPHVEPTGV 249


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 255 ILTFPSTFMRRCFTIFRTSFPVKAYFRRFL 166
           +LTFP   +R CF  F   F    + RRFL
Sbjct: 196 LLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 237 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 121
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


>At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family protein
           similar to lipase [Arabidopsis thaliana] GI:1145627;
           contains Pfam profile:PF00657 Lipase/Acylhydrolase with
           GDSL-like motif
          Length = 323

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 270 RISRVILTFPSTFMRRCFTIFRTSFPVK 187
           R   V +  P  F   CF I+ TSFPVK
Sbjct: 166 RAGAVNVVVPGNFPVGCFPIYLTSFPVK 193


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 519 TKIMDFIKFESGNLCMITGGRNLGRVGT 602
           T I+ +IK   G   +  GGRN+G+V T
Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223


>At1g30680.1 68414.m03751 toprim domain-containing protein contains
           Pfam profile: PF01751 toprim domain
          Length = 709

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 516 LRC*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLD 397
           +RC +D +   D WV     AA++RY +R ++    + LD
Sbjct: 541 IRCEMDSLPSID-WVLERAKAAVLRYGIRGLVIDPYNELD 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,486
Number of Sequences: 28952
Number of extensions: 387937
Number of successful extensions: 1094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)