BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0739 (720 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 131 4e-31 At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 131 4e-31 At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 131 4e-31 At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.77 At3g28110.1 68416.m03508 hypothetical protein 30 1.3 At1g29760.1 68414.m03639 expressed protein 30 1.8 At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.1 At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family prot... 28 5.4 At2g38570.1 68415.m04738 expressed protein ; expression supporte... 27 9.5 At1g30680.1 68414.m03751 toprim domain-containing protein contai... 27 9.5 >At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal protein S4, Arabidopsis thaliana, PIR:T48480 Length = 262 Score = 131 bits (317), Expect = 4e-31 Identities = 59/84 (70%), Positives = 68/84 (80%) Frame = +1 Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435 D TYPAGFMDVV I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PY Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138 Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507 L T+DGRTIRYPDPLIK ND+I+L Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKL 162 Score = 128 bits (308), Expect = 5e-30 Identities = 58/76 (76%), Positives = 66/76 (86%) Frame = +2 Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 203 VLKIVKQRLIKVDGKV 250 V+ I+ QR I+VDGKV Sbjct: 61 VISILMQRHIQVDGKV 76 Score = 81.8 bits (193), Expect = 4e-16 Identities = 35/69 (50%), Positives = 48/69 (69%) Frame = +3 Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647 P P + + + KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H Sbjct: 150 PDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209 Query: 648 IKDSTGHTF 674 I+DSTGH F Sbjct: 210 IQDSTGHEF 218 >At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) Length = 262 Score = 131 bits (317), Expect = 4e-31 Identities = 59/84 (70%), Positives = 68/84 (80%) Frame = +1 Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435 D TYPAGFMDVV I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PY Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138 Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507 L T+DGRTIRYPDPLIK ND+I+L Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKL 162 Score = 128 bits (308), Expect = 5e-30 Identities = 58/76 (76%), Positives = 66/76 (86%) Frame = +2 Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 203 VLKIVKQRLIKVDGKV 250 V+ I+ QR I+VDGKV Sbjct: 61 VISILMQRHIQVDGKV 76 Score = 81.4 bits (192), Expect = 5e-16 Identities = 35/69 (50%), Positives = 48/69 (69%) Frame = +3 Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647 P P + + + KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209 Query: 648 IKDSTGHTF 674 I+DSTGH F Sbjct: 210 IQDSTGHEF 218 >At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22 Length = 261 Score = 131 bits (317), Expect = 4e-31 Identities = 59/84 (70%), Positives = 68/84 (80%) Frame = +1 Query: 256 DPTYPAGFMDVVXIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 435 D TYPAGFMDVV I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PY Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138 Query: 436 LVTHDGRTIRYPDPLIKVNDSIQL 507 L T+DGRTIRYPDPLIK ND+I+L Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKL 162 Score = 128 bits (308), Expect = 5e-30 Identities = 58/76 (76%), Positives = 66/76 (86%) Frame = +2 Query: 23 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 202 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 203 VLKIVKQRLIKVDGKV 250 V+ I+ QR I+VDGKV Sbjct: 61 VISILMQRHIQVDGKV 76 Score = 81.4 bits (192), Expect = 5e-16 Identities = 35/69 (50%), Positives = 48/69 (69%) Frame = +3 Query: 468 PRPTYQSQRFHPVSIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 647 P P + + + KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIH 209 Query: 648 IKDSTGHTF 674 I+DSTGH F Sbjct: 210 IQDSTGHEF 218 >At4g10710.1 68417.m01751 transcriptional regulator-related similar to chromatin-specific transcription elongation factor FACT 140 kDa subunit (GI:5499741) [Homo sapiens] Length = 1074 Score = 31.1 bits (67), Expect = 0.77 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 147 KHSRNLWGPVDGLGAYTPPSLSNIHAL 67 KHS +LWG D L TPP+ ++ L Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70 >At3g28110.1 68416.m03508 hypothetical protein Length = 354 Score = 30.3 bits (65), Expect = 1.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 611 PRETSRLLRHCAHQGLHGTHLSPRGL 688 PRE +RLL C G H H+ P G+ Sbjct: 224 PREFTRLLASCTSTGTHVPHVEPTGV 249 >At1g29760.1 68414.m03639 expressed protein Length = 526 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 255 ILTFPSTFMRRCFTIFRTSFPVKAYFRRFL 166 +LTFP +R CF F F + RRFL Sbjct: 196 LLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225 >At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, putative / steroid 5-alpha-reductase, putative identical to gi:1280611; contains a steroid 5-alpha reductase, C-terminal domain Length = 262 Score = 29.1 bits (62), Expect = 3.1 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1 Query: 237 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 121 TF R C + P A +FL+ GKH+R WGP Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45 >At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family protein similar to lipase [Arabidopsis thaliana] GI:1145627; contains Pfam profile:PF00657 Lipase/Acylhydrolase with GDSL-like motif Length = 323 Score = 28.3 bits (60), Expect = 5.4 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -1 Query: 270 RISRVILTFPSTFMRRCFTIFRTSFPVK 187 R V + P F CF I+ TSFPVK Sbjct: 166 RAGAVNVVVPGNFPVGCFPIYLTSFPVK 193 >At2g38570.1 68415.m04738 expressed protein ; expression supported by MPSS Length = 302 Score = 27.5 bits (58), Expect = 9.5 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 519 TKIMDFIKFESGNLCMITGGRNLGRVGT 602 T I+ +IK G + GGRN+G+V T Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223 >At1g30680.1 68414.m03751 toprim domain-containing protein contains Pfam profile: PF01751 toprim domain Length = 709 Score = 27.5 bits (58), Expect = 9.5 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 516 LRC*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLD 397 +RC +D + D WV AA++RY +R ++ + LD Sbjct: 541 IRCEMDSLPSID-WVLERAKAAVLRYGIRGLVIDPYNELD 579 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,551,486 Number of Sequences: 28952 Number of extensions: 387937 Number of successful extensions: 1094 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1049 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1094 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1565336320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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