Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0738
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.24 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.2  

>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 622 SSDESICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCQSAPSFTDWKR 476
           S++ S  TS S ++SI  S   + + HSSPSF  + L   AP   +  R
Sbjct: 456 SANASPATSPSNQASIHASFTKESSTHSSPSFTLESLFSGAPRVVELTR 504


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 493 FTDW-KRDASGVRKSRT*LDNFIXPERTSSVRLHFRY 386
           + DW +R +SG+++  T  +  I  ER   +  HF Y
Sbjct: 870 WADWVQRTSSGIQEEDTIPNEMIDEERMLDLEKHFMY 906


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,971
Number of Sequences: 5004
Number of extensions: 59272
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)