Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0738
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1043 - 21957041-21957256,21957347-21957517,21957979-219580...    30   2.4  
03_06_0640 + 35230664-35231065,35231957-35232202                       30   2.4  
08_02_0979 - 23252004-23252038,23253874-23254624                       29   4.1  
01_06_0249 + 27868897-27871599                                         29   5.4  
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528...    28   7.2  
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511...    28   9.5  

>04_03_1043 -
           21957041-21957256,21957347-21957517,21957979-21958019,
           21958465-21958525,21959191-21960075
          Length = 457

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 230 AAVQSRTSGVCLNVCDDTVSGTRRTRLVTRTKESSXCASH 349
           A +++RTSG+CL   D      ++ +L+    +S  C  H
Sbjct: 395 AEMETRTSGLCLQSQDQVTFHCQKLKLIEIKHDSELCCDH 434


>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 37  YSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFL-IRVRPDASQRRIFSF 189
           YS R R+ R    ST+ DGI  L+T+  K    + L +R+  D    R  SF
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSF 207


>08_02_0979 - 23252004-23252038,23253874-23254624
          Length = 261

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 456 FRTPEASRFQSVNEGALWHKCWDPKDGE 539
           F  P A+    +  GALW +CW P+  +
Sbjct: 107 FDLPIAAASLQIARGALWPRCWGPRPAD 134


>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +3

Query: 465 PEASRFQSVNEGALWHKCWDPKDGELC-----LVRSKSG 566
           P   RF  V E  +    WDP  G+LC     +VRS SG
Sbjct: 301 PYKGRFMVVEEALVADGYWDPTTGQLCFNACPIVRSVSG 339


>03_02_0052 +
           5285061-5285106,5285711-5285754,5286317-5286539,
           5286664-5286827,5286918-5288144
          Length = 567

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +3

Query: 420 SGXMKLSSYVRDFRTPEASRFQSVNEGALWHK--CWDPKDGELCLVRSKSGETLMEDRSD 593
           S  +++S  V D R    +    ++ G +  K  CW    G L  V     E   E  + 
Sbjct: 104 SAWLQVSDGVADVRVVVKAAGDFIHAGGVAAKSGCWSMLKGGLTTVSGGRAEIYFESNAT 163

Query: 594 SDVQIDSSEL 623
           +D+ +DS  L
Sbjct: 164 ADIWVDSVSL 173


>02_05_0924 -
           32749682-32750200,32750756-32750959,32751062-32751109,
           32751769-32751819,32751907-32752032,32752117-32752257,
           32752750-32752971,32753160-32753312,32753536-32753718,
           32753964-32754110,32754212-32754319,32754426-32754530,
           32754824-32754928,32755243-32755310,32755498-32755576,
           32755876-32755935,32756023-32756076,32756168-32756233,
           32756701-32756753,32757042-32757096,32757645-32757787,
           32758236-32758333,32758436-32758716
          Length = 1022

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 631 PIPSSDESICTSESLRSSIRVSPDFDLTRHSSPSF 527
           PIP S     T+ +  SS R++P+  L   +SP F
Sbjct: 37  PIPQSGSPTSTTTTTTSSSRLTPELSLDGPASPLF 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,429,792
Number of Sequences: 37544
Number of extensions: 393075
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)