Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0738
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4) 34 0.15
SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 33 0.20
SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30) 29 3.2
SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 29 4.2
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 28 7.3
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) 28 9.7
SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_28521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -3
Query: 594 NRYGPPSGFPLTST*PGIVHHLSGPSICA 508
NRY PP FPL S GIVHHLSGP+ CA
Sbjct: 1 NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/74 (40%), Positives = 38/74 (51%)
Frame = -2
Query: 595 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCQSAPSFTDWKRDASGVRKSRT*LDNFIXPER 416
ESLR+S RVS F L RHSSPSFGSQ + S+++ + G R
Sbjct: 35 ESLRASTRVSSGFTLFRHSSPSFGSQQM----RSYSNLSKSRIGRSMMRLFFVE-KGSHL 89
Query: 415 TSSVRLHFRYAFQF 374
+ RLHF YA +F
Sbjct: 90 SDRSRLHFHYASEF 103
>SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.064
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++L +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSLDHSKTRTHVRLLGPCFKTG 45
>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
Length = 402
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F + ++ +S TRT RLLGPC+KTG
Sbjct: 247 AFTFISPRSFDHSKTRTHVRLLGPCFKTG 275
>SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 141 AFTFITPRSFGHSKTRTHVRLLGPCFKTG 169
>SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 260 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 288
>SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 385 AFQF-NVKNL*NSMTRTXARLLGPCYKTG 302
AF F ++ +S TRT RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -3
Query: 594 NRYGPPSGFPLTST*PGIVHH 532
NRY PP FPL S GIVHH
Sbjct: 1 NRYEPPPEFPLASPYSGIVHH 21
>SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 355 NSMTRTXARLLGPCYKTG 302
+S TRT RLLGPC+KTG
Sbjct: 28 HSKTRTHVRLLGPCFKTG 45
>SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -2
Query: 355 NSMTRTXARLLGPCYKT 305
+S TRT RLLGPC+KT
Sbjct: 352 HSETRTHVRLLGPCFKT 368
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 645 ISLSPLYPVPTNRFARQNRYGPPSGFPLTST 553
I LSP+ PV + F R + Y PS P TST
Sbjct: 191 IELSPIRPVTSTPFDRLDTYEVPSTTPQTST 221
>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
Length = 351
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 414 VRSGXMKLSSYVRDFRTPEASRFQSVNEGALWHKCWDPK 530
+ G M SSY+ + P +R + + A+ + CW PK
Sbjct: 211 ITEGQMTASSYLEKYGMPSLARLNNKHIPAVTNGCWVPK 249
>SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 466 PRRLVSNQ*MKARSGTNA--GTRKMVNYAWSGRSQGKP*WRTVAI 594
P R +++ +KAR G++ GT+++++Y WS ++ P R +I
Sbjct: 181 PLREMAHLLLKARKGSSITHGTQRLIDYPWSAKAHRLPTARKCSI 225
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 421 ERTSSVRLHFRYAFQFNVKNL*NSMTRTXARLLGPCYK 308
+R+S +RLH R +KN +++TR +LL P +K
Sbjct: 235 QRSSDLRLHSRKQPDIPIKNQLSNITRLLEQLLNPDHK 272
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -3
Query: 627 YPVPTNRF-ARQNRYGPP 577
YP+PTNR+ +NRY PP
Sbjct: 647 YPIPTNRYPLPKNRYPPP 664
>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
Length = 823
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 637 FAPIPSSDESICTSESLRSSIRVSP 563
F + S ES+CTSES + IR P
Sbjct: 321 FPDLEDSAESVCTSESESTQIRADP 345
>SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 295 SQDPSCNTDQGV*HXCESLS 354
S DP NT+QGV H ESLS
Sbjct: 43 SSDPPWNTEQGVLHGGESLS 62
>SB_28521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 291 ALAGPVL*HGPRSLAXVRVIE 353
A + P L HGPRSL VRV E
Sbjct: 61 ASSDPCLKHGPRSLTCVRVFE 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,663,128
Number of Sequences: 59808
Number of extensions: 476011
Number of successful extensions: 1118
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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